| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3306 |
|---|
| Symbol | |
|---|
| ID | 4023816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3660855 |
|---|
| End bp | 3662042 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637963510 |
|---|
| Product | Acetyl-CoA C-acetyltransferase |
|---|
| Protein accession | YP_570431 |
|---|
| Protein GI | 91977772 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.836004 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGATC CTGTCGTCAT CGTTTCCGCG GCGCGCACGC CGCTCGGCCG GTTCCAGGGC
GAACTGTCTG CACTCAGCGC TCATCAACTC GGCAGCCAGG TGATCGGCGC AGCGCTGGCG
CGGGGCAAGC TCGCCCCCGA ACGGATCGAC GAAGTCCTGA TGGGCTGTGT TCTCACCGCC
GGCCAGGGTC AGGCACCGGC ACGGCAGGCG GCGCGCGGTG CGAAATTGCC GGACGCCACC
GGCGCCACAA CGGTCAACAA GGTCTGCGGC TCCGGCATGA AAGCGACCAT GCTGGCAAAC
GACCTGATCC GCGCCGGCTC TGCCGACATC GTGCTGTCGG GCGGCATGGA GAGCATGAGC
AACGCCCCCT ATCTGCTGGC CAAGGCGCGC AGCGGCTATC GCGTCGGCCA CGACCGGATC
ATCGACCACA TGCTGATGGA CGGCCTGGAA GACGCCTATG AGAGCGGTCG GTCGATGGGC
GATTTCGGCG AGGCCACCGC CGAGGCCTAT CAATTCACCC GCGCCGACCA GGACGCCTAT
GCGATCGAGA CGCTGACCCG CGCCCGCAAT GCGGTTCAGA CCGGCGCGTT CCATGCGGAG
ATTGTGCCGG TCACCGTGAC CGACAAGGCC GGACCGCGCG AAATCGCCAA TGACGAACAC
CCGCTGAAGG TCGATCCGGC GAAGATCCCC GCTTTGAAGC CGGCGTTCCG AGCCGGCGGC
ACGATCACGC CGGCGGCCTC CTCCGCAAAT GCCGACGGCG CCGCGGCGCT GATTCTGGCG
CGGCGCTCGC TCGCCGAGCG CGACGGCCTG CCGCTACTGG CCGAGATCAA GGGCCATGCC
ACCCACAGCC AGGAGCCGCA ATGGTTCACC ACCGCGCCGA TCCCGGCGAT CCGTAAACTC
CTCGACAAGG TCGGCTGGAA CGTCAAGGAC GTCGACCTGT TCGAAATCAA CGAGGCCTTC
GCGGTGGTGG CAATGGCGGC GCGACAGGAC CTCGATATTC CGCGCGACAG GCTCAACGTC
AATGGCGGCG CCTGCGCGCT CGGCCACCCG ATCGGCGCCA CCGGCGCGCG GCTGATCGTG
ACCCTGCTGC ACGCGCTGCA GGCACGCGGC CTGAAACGCG GCGTCGCGGC GCTGTGCATC
GGCGGCGGTG AAGCCACCGC GATTGCAATC GAGCGCGACG CTCACTAG
|
|---|
| Protein sequence | MSDPVVIVSA ARTPLGRFQG ELSALSAHQL GSQVIGAALA RGKLAPERID EVLMGCVLTA
GQGQAPARQA ARGAKLPDAT GATTVNKVCG SGMKATMLAN DLIRAGSADI VLSGGMESMS
NAPYLLAKAR SGYRVGHDRI IDHMLMDGLE DAYESGRSMG DFGEATAEAY QFTRADQDAY
AIETLTRARN AVQTGAFHAE IVPVTVTDKA GPREIANDEH PLKVDPAKIP ALKPAFRAGG
TITPAASSAN ADGAAALILA RRSLAERDGL PLLAEIKGHA THSQEPQWFT TAPIPAIRKL
LDKVGWNVKD VDLFEINEAF AVVAMAARQD LDIPRDRLNV NGGACALGHP IGATGARLIV
TLLHALQARG LKRGVAALCI GGGEATAIAI ERDAH
|
|---|
| |