Gene RPD_3263 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3263 
Symbol 
ID4023772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3618230 
End bp3620701 
Gene Length2472 bp 
Protein Length823 aa 
Translation table11 
GC content66% 
IMG OID637963466 
ProductGGDEF domain-containing protein 
Protein accessionYP_570388 
Protein GI91977729 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.505272 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0188665 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGGCCG TAAGAACGAA TTCCGAGACG CTGACAACTC AACTCGCCGC CGACCTCGCT 
ATTTTGCAGC GGAAATGGCA AGCGGCAGTC CAGCCTGGAC AGACGTTGCC GAGCTATGAA
GAGGTGATGC TCGGCAGCCT CGGCCGGCTC GCCGATCACA TGGTGCTGCT TCAGCTTTCG
GGCGGAGAGC CGGGTGTGTC GCGCACCGGC CGCTACGTTC AGCAATGGCT GGGCGACGAG
CGCTGGGACA TCTCACTCGA CGCGCTGCCG CCGGATTGCG CCACGGCGCT GATGCAGGCG
GCGTCGGGCG CGCAGCAGAA TCTGCGGCCC TATCTCGGCA TGGCGCATTT CGTGCGCGAC
GGCATCGTGC AGAAATACGT GCTGCTGGCG CTGCCGACAT CGTCGCGCTG GGGCGGCACG
CTGATCGGCG TCTATGTCAA CGAGGACGGC TTCCGCTACA ATCTGCTCGA CGCGATCTTC
TCCTCGACCG ACGACGGCAT CGTTTCGCTG ACCGCGATCC GCGACGCGGA TGATCGGCCG
TTCGATTTCC AGATCGTGCA TCTCAACGAC GGCGCGTCGG CATTGCTGCG GCAGCCGGTG
GAGATGCTGC AATGGAGCCG GCTTTCCGCC GGCCGGCATA TGCTGTGCGA GCCGGCCGTG
GTCGCGCGTC TGCTCGCGCT GGTCGACAAA GGCGGCCAGG ACACCATCGC GATCGACAGC
GACGACCGCA ATCTCAGCCT CGGCGCCACC GCCTTCGGCG ACATCGTCTC GCTGACGATC
TCCGACATCA CGTCGCTGAA GAAGCGCGAG GAATCCTTTC GTCTGTTGTT CGACGGCAAT
CCGATGCCGA TGTGGGTGTT CGACGCGACG ACCACCGAGT TCCTCAGCGT CAACGACGCC
GCCGTGCAGC ACTACGGCTA CGACCGCGAC GCCTTTCTGC GGATGACGCT GCGCGAAATC
TGGCCGCGCG ACGAATGGGC CTCGCACAGC CATGCGCTGC TGCACGTCGG CGATAGCTAC
CAGTCCGGCG GCAACTGGCG CCACATCAAG GCCGACGGCA GTGAGATCCA GGTGCTGACT
TTCGGCCGCC GCGTGGTGTT CGACGGCCGC GACGGATTTC TCGTCGTGGT GGTCGATATC
ACCGAACGCC GCAAGGCCGA GGCCAAGATC GCCCATATGG CGCATCACGA CGGCCTGACC
AATCTGCCGA ACCGCGCCTT GTATCAGGAG CGGCTGCAGC AGGCGCTGGA GCAGGGGCGG
GCCGGCGGCG CCAGGGTCGC GGTGCTGTGC ATCGACCTCG ATCTGTTCAA GAACGTCAAC
GACTCGTTCG GCCATCCGAT GGGCGATCGG CTGCTGCGCT GCGTCGCCGA GCGGCTGCGG
GCGCAGGTAG GCGGACAGGA TCTGGTGGCG CGGTTCGGCG GTGACGAGTT CGCGATCGTG
CTGGCGCAGG TCACGTCGCC GAACGAGGCC AGCGACTTCG CCGCGCGGCT GATCGAGATC
GTCAGCGCGC CCTACGACAT GGACGGCCTC GAAGTGGTGA TCGGCGCCTC GATCGGGATC
GCGCTGGCGC CGGGCGACGG CGAGGATTGC GACGCCCTGC TGCGCAACGC CGACATGGCG
CTGTATCGCG CCAAGGCGCA TGGCGGCGGC TGCCATCATT TCTTCGAGAA GGAGATGGAC
CGCCAGGCGC AGATCCGCCG CGACATGGAG CTCGATATGC GCCACGCCTT CGCGCGCGGC
GAGTTCGAGC TGCACTATCA GCCGCTGATC GATCTGGCAG AAGATCGCAT CAGCGGCTTC
GAATCGCTGC TGCGCTGGCG CCATATCGAG CGCGGGATGA TCTCGCCGGC GGATTTCATT
CCGATCGCCG AGGATATCGG GCTGATCGTC GGCCTCGGCG AATGGGTGCT GCGGCAGGCC
TGCATCGAGG CGGCGCGATG GCCGGACGAC ATCAAGCTCG CGGTCAATTT GTCGCCGGTG
CAATTCCGCA GCCGCAATCT GGTGCAGGTG GTGATCTCGG CGCTGGCGCA ATCCGGCCTG
GCGCCGCGCC GGGTCGAACT GGAAATCACC GAATCGCTGT TTCTCGCCGA CAGCGAGGCC
AATCTCGCGA CCTTGCACCA GCTCCGCAGT CTCGGCGTCC GGATTTCGAT GGACGATTTC
GGCACCGGCT ATTCAAGCCT GAGCTACTTG CGCAGCTTCC CGTTCGACAA GATCAAGATC
GACCGCTCCT TCGTGAAGGA TCTCACCGAG CGGCCGGATT GCCTCGCGAT CGTGCGCGCG
ATCTCCGGCC TCGGCCGCAG CCTGAACATC ACCACGCTCG CCGAAGGCGT CGAAACCATC
GACCAGCTGC AAGCGCTGCG CGGCGAAGGC TGCCACGAAG TGCAGGGCTT CCTGTTCAGC
CCGGCGCGCC CGGCGTGCGA GATCGACGGC CTGCTGATGA AGTTCGGCCG CCAGGCCTCG
CAGGCGGCGT GA
 
Protein sequence
MTAVRTNSET LTTQLAADLA ILQRKWQAAV QPGQTLPSYE EVMLGSLGRL ADHMVLLQLS 
GGEPGVSRTG RYVQQWLGDE RWDISLDALP PDCATALMQA ASGAQQNLRP YLGMAHFVRD
GIVQKYVLLA LPTSSRWGGT LIGVYVNEDG FRYNLLDAIF SSTDDGIVSL TAIRDADDRP
FDFQIVHLND GASALLRQPV EMLQWSRLSA GRHMLCEPAV VARLLALVDK GGQDTIAIDS
DDRNLSLGAT AFGDIVSLTI SDITSLKKRE ESFRLLFDGN PMPMWVFDAT TTEFLSVNDA
AVQHYGYDRD AFLRMTLREI WPRDEWASHS HALLHVGDSY QSGGNWRHIK ADGSEIQVLT
FGRRVVFDGR DGFLVVVVDI TERRKAEAKI AHMAHHDGLT NLPNRALYQE RLQQALEQGR
AGGARVAVLC IDLDLFKNVN DSFGHPMGDR LLRCVAERLR AQVGGQDLVA RFGGDEFAIV
LAQVTSPNEA SDFAARLIEI VSAPYDMDGL EVVIGASIGI ALAPGDGEDC DALLRNADMA
LYRAKAHGGG CHHFFEKEMD RQAQIRRDME LDMRHAFARG EFELHYQPLI DLAEDRISGF
ESLLRWRHIE RGMISPADFI PIAEDIGLIV GLGEWVLRQA CIEAARWPDD IKLAVNLSPV
QFRSRNLVQV VISALAQSGL APRRVELEIT ESLFLADSEA NLATLHQLRS LGVRISMDDF
GTGYSSLSYL RSFPFDKIKI DRSFVKDLTE RPDCLAIVRA ISGLGRSLNI TTLAEGVETI
DQLQALRGEG CHEVQGFLFS PARPACEIDG LLMKFGRQAS QAA