| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3263 |
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| Symbol | |
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| ID | 4023772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3618230 |
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| End bp | 3620701 |
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| Gene Length | 2472 bp |
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| Protein Length | 823 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963466 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_570388 |
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| Protein GI | 91977729 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.505272 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0188665 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGGCCG TAAGAACGAA TTCCGAGACG CTGACAACTC AACTCGCCGC CGACCTCGCT
ATTTTGCAGC GGAAATGGCA AGCGGCAGTC CAGCCTGGAC AGACGTTGCC GAGCTATGAA
GAGGTGATGC TCGGCAGCCT CGGCCGGCTC GCCGATCACA TGGTGCTGCT TCAGCTTTCG
GGCGGAGAGC CGGGTGTGTC GCGCACCGGC CGCTACGTTC AGCAATGGCT GGGCGACGAG
CGCTGGGACA TCTCACTCGA CGCGCTGCCG CCGGATTGCG CCACGGCGCT GATGCAGGCG
GCGTCGGGCG CGCAGCAGAA TCTGCGGCCC TATCTCGGCA TGGCGCATTT CGTGCGCGAC
GGCATCGTGC AGAAATACGT GCTGCTGGCG CTGCCGACAT CGTCGCGCTG GGGCGGCACG
CTGATCGGCG TCTATGTCAA CGAGGACGGC TTCCGCTACA ATCTGCTCGA CGCGATCTTC
TCCTCGACCG ACGACGGCAT CGTTTCGCTG ACCGCGATCC GCGACGCGGA TGATCGGCCG
TTCGATTTCC AGATCGTGCA TCTCAACGAC GGCGCGTCGG CATTGCTGCG GCAGCCGGTG
GAGATGCTGC AATGGAGCCG GCTTTCCGCC GGCCGGCATA TGCTGTGCGA GCCGGCCGTG
GTCGCGCGTC TGCTCGCGCT GGTCGACAAA GGCGGCCAGG ACACCATCGC GATCGACAGC
GACGACCGCA ATCTCAGCCT CGGCGCCACC GCCTTCGGCG ACATCGTCTC GCTGACGATC
TCCGACATCA CGTCGCTGAA GAAGCGCGAG GAATCCTTTC GTCTGTTGTT CGACGGCAAT
CCGATGCCGA TGTGGGTGTT CGACGCGACG ACCACCGAGT TCCTCAGCGT CAACGACGCC
GCCGTGCAGC ACTACGGCTA CGACCGCGAC GCCTTTCTGC GGATGACGCT GCGCGAAATC
TGGCCGCGCG ACGAATGGGC CTCGCACAGC CATGCGCTGC TGCACGTCGG CGATAGCTAC
CAGTCCGGCG GCAACTGGCG CCACATCAAG GCCGACGGCA GTGAGATCCA GGTGCTGACT
TTCGGCCGCC GCGTGGTGTT CGACGGCCGC GACGGATTTC TCGTCGTGGT GGTCGATATC
ACCGAACGCC GCAAGGCCGA GGCCAAGATC GCCCATATGG CGCATCACGA CGGCCTGACC
AATCTGCCGA ACCGCGCCTT GTATCAGGAG CGGCTGCAGC AGGCGCTGGA GCAGGGGCGG
GCCGGCGGCG CCAGGGTCGC GGTGCTGTGC ATCGACCTCG ATCTGTTCAA GAACGTCAAC
GACTCGTTCG GCCATCCGAT GGGCGATCGG CTGCTGCGCT GCGTCGCCGA GCGGCTGCGG
GCGCAGGTAG GCGGACAGGA TCTGGTGGCG CGGTTCGGCG GTGACGAGTT CGCGATCGTG
CTGGCGCAGG TCACGTCGCC GAACGAGGCC AGCGACTTCG CCGCGCGGCT GATCGAGATC
GTCAGCGCGC CCTACGACAT GGACGGCCTC GAAGTGGTGA TCGGCGCCTC GATCGGGATC
GCGCTGGCGC CGGGCGACGG CGAGGATTGC GACGCCCTGC TGCGCAACGC CGACATGGCG
CTGTATCGCG CCAAGGCGCA TGGCGGCGGC TGCCATCATT TCTTCGAGAA GGAGATGGAC
CGCCAGGCGC AGATCCGCCG CGACATGGAG CTCGATATGC GCCACGCCTT CGCGCGCGGC
GAGTTCGAGC TGCACTATCA GCCGCTGATC GATCTGGCAG AAGATCGCAT CAGCGGCTTC
GAATCGCTGC TGCGCTGGCG CCATATCGAG CGCGGGATGA TCTCGCCGGC GGATTTCATT
CCGATCGCCG AGGATATCGG GCTGATCGTC GGCCTCGGCG AATGGGTGCT GCGGCAGGCC
TGCATCGAGG CGGCGCGATG GCCGGACGAC ATCAAGCTCG CGGTCAATTT GTCGCCGGTG
CAATTCCGCA GCCGCAATCT GGTGCAGGTG GTGATCTCGG CGCTGGCGCA ATCCGGCCTG
GCGCCGCGCC GGGTCGAACT GGAAATCACC GAATCGCTGT TTCTCGCCGA CAGCGAGGCC
AATCTCGCGA CCTTGCACCA GCTCCGCAGT CTCGGCGTCC GGATTTCGAT GGACGATTTC
GGCACCGGCT ATTCAAGCCT GAGCTACTTG CGCAGCTTCC CGTTCGACAA GATCAAGATC
GACCGCTCCT TCGTGAAGGA TCTCACCGAG CGGCCGGATT GCCTCGCGAT CGTGCGCGCG
ATCTCCGGCC TCGGCCGCAG CCTGAACATC ACCACGCTCG CCGAAGGCGT CGAAACCATC
GACCAGCTGC AAGCGCTGCG CGGCGAAGGC TGCCACGAAG TGCAGGGCTT CCTGTTCAGC
CCGGCGCGCC CGGCGTGCGA GATCGACGGC CTGCTGATGA AGTTCGGCCG CCAGGCCTCG
CAGGCGGCGT GA
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| Protein sequence | MTAVRTNSET LTTQLAADLA ILQRKWQAAV QPGQTLPSYE EVMLGSLGRL ADHMVLLQLS
GGEPGVSRTG RYVQQWLGDE RWDISLDALP PDCATALMQA ASGAQQNLRP YLGMAHFVRD
GIVQKYVLLA LPTSSRWGGT LIGVYVNEDG FRYNLLDAIF SSTDDGIVSL TAIRDADDRP
FDFQIVHLND GASALLRQPV EMLQWSRLSA GRHMLCEPAV VARLLALVDK GGQDTIAIDS
DDRNLSLGAT AFGDIVSLTI SDITSLKKRE ESFRLLFDGN PMPMWVFDAT TTEFLSVNDA
AVQHYGYDRD AFLRMTLREI WPRDEWASHS HALLHVGDSY QSGGNWRHIK ADGSEIQVLT
FGRRVVFDGR DGFLVVVVDI TERRKAEAKI AHMAHHDGLT NLPNRALYQE RLQQALEQGR
AGGARVAVLC IDLDLFKNVN DSFGHPMGDR LLRCVAERLR AQVGGQDLVA RFGGDEFAIV
LAQVTSPNEA SDFAARLIEI VSAPYDMDGL EVVIGASIGI ALAPGDGEDC DALLRNADMA
LYRAKAHGGG CHHFFEKEMD RQAQIRRDME LDMRHAFARG EFELHYQPLI DLAEDRISGF
ESLLRWRHIE RGMISPADFI PIAEDIGLIV GLGEWVLRQA CIEAARWPDD IKLAVNLSPV
QFRSRNLVQV VISALAQSGL APRRVELEIT ESLFLADSEA NLATLHQLRS LGVRISMDDF
GTGYSSLSYL RSFPFDKIKI DRSFVKDLTE RPDCLAIVRA ISGLGRSLNI TTLAEGVETI
DQLQALRGEG CHEVQGFLFS PARPACEIDG LLMKFGRQAS QAA
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