| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3261 |
|---|
| Symbol | thrS |
|---|
| ID | 4023770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3615577 |
|---|
| End bp | 3617640 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637963464 |
|---|
| Product | threonyl-tRNA synthetase |
|---|
| Protein accession | YP_570386 |
|---|
| Protein GI | 91977727 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0441] Threonyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.565813 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0408031 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA AGACCCCCGC CGACAAGAAC CTGCCCGCCG GCTCCGGCTT TCAATACACC
CTCTCCAATC TCAAGCCGGC GGTGAACGCC GAGCAGATCA CCGTCACCTT CCCGGACGGC
AAGACCCGCG ATTATCCGCG CGGCACCACC GGGCTCGAGA TCGCCAAGGG GATCTCGCCG
TCGCTGGCCA AGCGCACCGT GGTGATGGCG CTGAACGGCG TGCTGACCGA CCTCGCCGAT
CCGATCGACG ACAATGCCGC GATCGATTTC GTCGCGCGCG ACGATTCCCG CGCGCTGGAA
TTGATCCGCC ACGATTGCGC GCATGTGCTC GCCGAAGCCG TGCAGGCGCT GTGGCCGGGC
ACCCAGGTGA CGATCGGCCC GACCATCGAG AACGGGTTCT ATTACGACTT CTTCCGCAAC
GAGCCGTTCA CGCCCGAAGA CTTCGCGGCG ATCGAGAAGA AGATGCGCGA GATCATCGCG
CGCGACAAAC CCTTCACCAA GGAAGTCTGG ACCCGCGACC AGACCAAGCA GGTGTTCGCC
GACAATGGCG AGATGTTCAA GGTCGAGCTG GTCGACGCGA TCCCCGCCGA CCAGTCGATC
AAGATCTACA AACAGGGCGA CTGGTTCGAT CTGTGCCGCG GCCCGCACAT GACCTCGACC
GGCAAGATCG GCTCGGCCTT CAAGCTGATG AAGGTCGCCG GCGCGTATTG GCGCGGCGAC
AGCAACAATC CGATGCTGAC CCGGATCTAC GGCACCGCCT TCGCCAAGCA GGAAGACCTC
GACGCTTATC TGAAGCAGAT CGAGGAAGCC GAGAAGCGCG ATCACCGCCG GCTCGGCCGC
GAACTCGACC TGTTCCACTT CCAGGAGGAA GGACCGGGCG TGGTGTTCTG GCACGCCAAG
GGCTGGAGCG TATTCCAGTC GCTGGTCGCC TATATGCGCC GCCGGCTGGC GGGCAATTAC
GACGAGGTCA ACGCGCCGCA GATTCTCGAC AAGGTGCTTT GGGAGACTTC GGGCCATTGG
GACTGGTACC GCGAGAACAT GTTCGCGGCG CAGTCGGCCG GCGAAAACGC CGAGGACAAG
CGCTGGTTCG CGCTGAAGCC GATGAACTGC CCGGGCCATG TGCAGATCTT CAAGCACGGC
CTGAAGAGCT ATCGCGATTT GCCGCTGCGG ATGGCCGAAT TCGGCATCGT GCATCGCTAC
GAGCCGTCCG GCGCGATGCA CGGCCTGATG CGGGTGCGCG GCTTCACGCA GGACGACGCC
CATGTGTTCT GCACCGAGGC GCAGCTCGCC GAGGAATGTC TCAAGATCAA CGACCTGATC
CTGTCGACCT ATTCCGACTT CGGCTTCGAC GGCGAACTCA CCGTGAAGCT GTCGACCCGG
CCCGACAAGC GTGTCGGCAC CGACGAGATG TGGGACCACG CCGAGCGGGT GATGGCCACC
GTGCTGTCCG AGATCAAGGC GCAGGGCGAT AACCGGATCA AGACCGAGAT CAATCCGGGC
GAAGGCGCGT TCTACGGGCC GAAGTTCGAA TACGTGCTGC GCGACGCGAT CGGCCGCGAC
TGGCAATGCG GCACCACCCA GGTCGACTTC AATCTGCCGG AGCGGTTCGG CGCGTTCTAC
ATCGACGCCG ACGGCGCCAA GAAGGCCCCG GTGATGGTGC ATCGCGCGAT CTGCGGCTCG
ATGGAGCGCT TCATCGGCAT CCTGATCGAG CACTTCGCCG GCAACTTCCC GCTGTGGCTG
GCGCCGGTGC AACTGGTGGT CGCGACGATT ACCTCGGAAG GCGACGAATA CGCCAAGAAG
GTGGTCGCCG CGGCGCGCCG CGCCGGACTG CGCGTCGACA TTGATCTCCG CAACGAGAAG
ATCAACCTCA AGGTGCGCGA GCATTCGCTG GCCAAGGTCC CGGCCCTCTT GGTCGTCGGC
CGCAAGGAAG CCGAGACCCA TTCGGTCTCG GTCCGCCGGC TCGGCAGCGA CGGCCAGACC
GTGATGGCGA CCGCGGACGC GATCGCAGCG TTGGTCGAGG AGGCAACGCC GCCGGACGTC
AAGCGGATGC GGGCAGCGGC GTAA
|
|---|
| Protein sequence | MTDKTPADKN LPAGSGFQYT LSNLKPAVNA EQITVTFPDG KTRDYPRGTT GLEIAKGISP
SLAKRTVVMA LNGVLTDLAD PIDDNAAIDF VARDDSRALE LIRHDCAHVL AEAVQALWPG
TQVTIGPTIE NGFYYDFFRN EPFTPEDFAA IEKKMREIIA RDKPFTKEVW TRDQTKQVFA
DNGEMFKVEL VDAIPADQSI KIYKQGDWFD LCRGPHMTST GKIGSAFKLM KVAGAYWRGD
SNNPMLTRIY GTAFAKQEDL DAYLKQIEEA EKRDHRRLGR ELDLFHFQEE GPGVVFWHAK
GWSVFQSLVA YMRRRLAGNY DEVNAPQILD KVLWETSGHW DWYRENMFAA QSAGENAEDK
RWFALKPMNC PGHVQIFKHG LKSYRDLPLR MAEFGIVHRY EPSGAMHGLM RVRGFTQDDA
HVFCTEAQLA EECLKINDLI LSTYSDFGFD GELTVKLSTR PDKRVGTDEM WDHAERVMAT
VLSEIKAQGD NRIKTEINPG EGAFYGPKFE YVLRDAIGRD WQCGTTQVDF NLPERFGAFY
IDADGAKKAP VMVHRAICGS MERFIGILIE HFAGNFPLWL APVQLVVATI TSEGDEYAKK
VVAAARRAGL RVDIDLRNEK INLKVREHSL AKVPALLVVG RKEAETHSVS VRRLGSDGQT
VMATADAIAA LVEEATPPDV KRMRAAA
|
|---|
| |