Gene RPD_3205 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3205 
Symbol 
ID4023711 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3555571 
End bp3556794 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content66% 
IMG OID637963406 
Productbeta-lactamase 
Protein accessionYP_570331 
Protein GI91977672 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCGC ACGCCGCCGC CAAACCCGCC CCAGCCGCGC AGACGCCGCA GCTCGCACAG 
GCCAAGCCGG AGACGATCGG GCTGTCCTCC GCCCGCCTGC AGGCGATGTC CGACGCCTTC
CAGCGCGAGA TCGACAAGGG CAGCATTCCC GGCGTCACGG TGCTGGTGTC ACGCCGCGGT
CATATCGGCT GGTTCGAAGC GCTCGGCCGG CAGGCTCCCG GCCTCGAGAC GCCGATGCGT
CGGGACAGCC TGTTCCGGAT CTTCTCGATG ACCAAGCCGA TCGTCTCGGT CGGCATCATG
CAACTGGTCG AGGACGGCCA TCTGCAGCTC GACGATCCGC TGCAGAAATT CATTCCGGAG
TTCGAGAACA CCAACGTTGG TGTCGTCGAG AACGGCAAGC TCGATCTGGT GCCGCTGGTG
CGGCCGATCA CCATTCAGGA TTTGCTCCGC CACACCTCCG GGATCACCTA TGATCACGTC
AGCGACGGCC CGATCCAGAA GATGTATCGC GAGTCCCGGG TCCGCAGCCG CAAGATCACC
AACGAGGAGC ACGCCAGCCT GATCGCGGCG ATGCCGCTGG TGTGTCAGCC GGGCGCCGGG
TGGAACTACA GCCGCTCCAC CGACATTCTC GGGCGCGTCA TCGAAGTCAT CTCCGGCAAG
ACGCTCGGCG CGTTCCTGAA CGAGCGGATT CTCGCGCCGC TGCAGATGGC CGAGACGGCG
TTCCACACCG GAGCGGAGAA CAAGGGCCGT CTCGCCCAAG CCTTCCCGAC CGATCCGTGG
ACCGGCGATC CGGTGGCGCT GTTCGACATG CTGGAGAAGC CGGCGATGGA ATCCGGCGGC
GGCGGGCTGG TGTCGACCAC AATGGACTAC GCGCGGTTCT GCCAGATGCT GCTGTCCGGC
GGTTCGCTCG ACGGCGCCCG CATCATCGGC CGCAAGACGC TGCAATTGAT GGCGAGCAAT
CACCTCGCCG CGCACATTCC GCCGGACAAC TACATCCTGC CGCCGGGCCA CGGCTTCGGG
CTCGGCTTTG CGGTGCGCAC CGAGCCGGGC ATCGCCCCAT TTCCCGGCTC GGTCGGCCAG
TTCTACTGGA GCGGCATCGC CGGGACGTTC TTCTGGATCG ATCCGGCAGA AGAGCTGTTC
GCGGTGTTCA TGTCGCAGGG CCCGGGCCAA CGCGAGTATT TCCGCACGCT GGTGCGTAAT
CTGGTGTACG CGGCGGTGGA GTAA
 
Protein sequence
MTAHAAAKPA PAAQTPQLAQ AKPETIGLSS ARLQAMSDAF QREIDKGSIP GVTVLVSRRG 
HIGWFEALGR QAPGLETPMR RDSLFRIFSM TKPIVSVGIM QLVEDGHLQL DDPLQKFIPE
FENTNVGVVE NGKLDLVPLV RPITIQDLLR HTSGITYDHV SDGPIQKMYR ESRVRSRKIT
NEEHASLIAA MPLVCQPGAG WNYSRSTDIL GRVIEVISGK TLGAFLNERI LAPLQMAETA
FHTGAENKGR LAQAFPTDPW TGDPVALFDM LEKPAMESGG GGLVSTTMDY ARFCQMLLSG
GSLDGARIIG RKTLQLMASN HLAAHIPPDN YILPPGHGFG LGFAVRTEPG IAPFPGSVGQ
FYWSGIAGTF FWIDPAEELF AVFMSQGPGQ REYFRTLVRN LVYAAVE