| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3160 |
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| Symbol | |
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| ID | 4023665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3512678 |
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| End bp | 3513697 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637963361 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_570287 |
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| Protein GI | 91977628 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.277203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.200349 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGATCC AGAAAAATTG GCAAGAACTG ATTCGACCGA ACAAGCTTCA GGTTTCGCCG
GGCAGTGATG CGACGCGGTT CGCGACGCTG GTCGCCGAGC CGCTCGAGCG CGGCTTCGGC
CAGACGCTGG GCAACGCGCT GCGGCGCGTG TTGCTGTCCT CGCTGCAGGG CGCTGCGGTG
CAGTCGGTGC AGATCGACGG CGTGCTGCAC GAGTTCTCCT CGATTGCCGG CGTGCGCGAG
GACGTCACCG ACATCGTGCT GAACATCAAG GACATCTCGC TGAAGATGCA GGGCGAAGGC
CCGAAGCGGA TGGTCGTCAA GAAGCAGGGT CCGGGCGTCG TCACCGCCGG CGACATCCAG
ACCGTCGGCG ATATCGTCGT GCTGAACCCC GACCTGCAGA TCTGCACCCT GGACGAGGGC
GCGGAGATCC GCATGGAGTT CACCGTCAAC ACCGGCAAGG GCTACGTCGC CGCCGAGCGT
AACCGTCCCG AGGACGCGCC GATCGGCCTG ATCCCGGTCG ACAGCCTGTA CTCGCCGGTT
CGCAAGGTGT CGTACAAGGT CGAGAACACC CGCGAGGGCC AGATCCTCGA CTACGACAAG
CTGACCATGA CGGTCGAGAC CAACGGCGCG CTGACGCCGG ATGACGCGGT GGCCTTCGCC
GCCCGCATCC TGCAGGATCA GCTCAACGTC TTCGTCAACT TCGAAGAGCC GCGCAAGGAA
GTCACCCAGG AGATCATTCC GGATCTCGCC TTCAACCCGG CTTTCCTCAA GAAGGTGGAC
GAGCTCGAGC TGTCGGTGCG TTCGGCGAAC TGCCTGAAGA ACGACAACAT CGTCTATATC
GGCGATCTGG TGCAGAAGTC GGAAGCAGAG ATGCTGCGCA CTCCGAACTT CGGCCGCAAG
TCGCTGAACG AGATCAAGGA AGTGCTGGCG CAGATGGGCC TGCATCTCGG CATGGAAGTG
CCGGGCTGGC CGCCGGAGAA CATCGACGAG CTCGCCAAGC GTTTCGAAGA TCACTACTGA
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| Protein sequence | MTIQKNWQEL IRPNKLQVSP GSDATRFATL VAEPLERGFG QTLGNALRRV LLSSLQGAAV
QSVQIDGVLH EFSSIAGVRE DVTDIVLNIK DISLKMQGEG PKRMVVKKQG PGVVTAGDIQ
TVGDIVVLNP DLQICTLDEG AEIRMEFTVN TGKGYVAAER NRPEDAPIGL IPVDSLYSPV
RKVSYKVENT REGQILDYDK LTMTVETNGA LTPDDAVAFA ARILQDQLNV FVNFEEPRKE
VTQEIIPDLA FNPAFLKKVD ELELSVRSAN CLKNDNIVYI GDLVQKSEAE MLRTPNFGRK
SLNEIKEVLA QMGLHLGMEV PGWPPENIDE LAKRFEDHY
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