| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3156 |
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| Symbol | |
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| ID | 4023661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3508837 |
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| End bp | 3510231 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963357 |
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| Product | peptidase S1C, Do |
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| Protein accession | YP_570283 |
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| Protein GI | 91977624 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.967436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.845897 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTCGA TCCGAACGCT GACCGCACTT TGTTTGTCGA TCGCGCTGGC GACGCCGGTC
GCGGCGCAGG AGCGGCGGCT GCCGTCGTCG CTGGGCGAGG TCAAGCTGAG CTACGCGCCA
ATCGTCCAGC ACGCCCAGCC GGCCGTGGTG AACGTCTACG CCGCCAAGGT GGTGCAGAAC
CGCAATCCGC TGCTCGAAGA TCCGATCTTT CGCCGCTTCT TCGGCGGCGG CGGCCCGCAG
CCGGAGCAGA TCCAGCGCTC GCTCGGCTCT GGCGTGATGG TCGATCCGTC GGGTCTGGTC
GTCACCAACA ATCACGTCAT CGACGGCGCC GATCAGGTCA AGGTGGCGCT CGCCGACAAG
CGCGAGTTCG AAGCCGAGAT CGTGCTGAAG GACAGCCGCA CCGATCTGGC GGTGCTGCGG
CTCAAGGATA CCAAGGAAAA ATTCGCGACG CTCGAACTTT CGAATTCCGA TGATCTGCTG
GTCGGCGACC TCGTCCTCGC AATGGGCAAT CCGTTCGGCG TCGGTCAGAC CGTGACGCAC
GGCATCGTCT CGGCGCTGGC GCGCACCCAG GTCGGCATCA CCGACTATCA GTTCTTCGTT
CAGACCGACG CCGCGATCAA TCCCGGCAAT TCCGGCGGCG CGCTGGTCGA TATGACCGGC
AAGCTGGTCG GCATCAATAC CGCGATCTTC TCGCGCTCCG GCGGCTCGCA GGGCATCGGC
TTTGCGATCC CGGCCAACAT GGTGCGCGTG GTGATCGCCT CGGCCAAGGG CGGCGGCAAG
GCGGTGAAAC GGCCATGGCT CGGCGCGCGG CTGCAGGCGG TGACGCCGGA GATCGCCGAG
ACGCTCGGCC TGAAGCGGCC GAGTGGCGCG CTGGTGGCGA GCGTCACCAA GGGAAGTCCC
TCGGAGAAGG CCGGTTTGAA ACTGTCCGAT CTGATCGTCG CGGTCGACGG CTTCCCGATC
GATGATCCGA ATGCGTTCGA CTATCGCTTC GCGACACGGC CGCTCGGCGG CACCGCACAG
ATCGACGCGC AGCGCGCCGG CAAGCCGGTG AAGCTCACCA TCGCGCTCGA GACCGCGCCG
GACACCGGCC GCGACGAGAT CGTGCTGACC GCGCGCTCGC CGTTCCAGGG CGCCAAGATC
GCCAACATCT CGCCGGCGAT CGCCGACGAG ATGCGGCTCG ACCCGAGCGT CGAAGGCGTG
GTCGTCACGG AACTCGCCGA CGACGCCACC GCCGCGAATG TCGGTTTCCA GAAGGGCGAC
ATTATCGTCG CGGTCAACAA CAAGCGGATC GGCAAAACCA GCGACCTCGA GCGGATCACC
AACGAATCCG CGCGACTGTG GCGCATCACG CTGGTCCGCG GCGGCCAGCA GATCAACGTC
ACGCTCGGCG GATGA
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| Protein sequence | MISIRTLTAL CLSIALATPV AAQERRLPSS LGEVKLSYAP IVQHAQPAVV NVYAAKVVQN
RNPLLEDPIF RRFFGGGGPQ PEQIQRSLGS GVMVDPSGLV VTNNHVIDGA DQVKVALADK
REFEAEIVLK DSRTDLAVLR LKDTKEKFAT LELSNSDDLL VGDLVLAMGN PFGVGQTVTH
GIVSALARTQ VGITDYQFFV QTDAAINPGN SGGALVDMTG KLVGINTAIF SRSGGSQGIG
FAIPANMVRV VIASAKGGGK AVKRPWLGAR LQAVTPEIAE TLGLKRPSGA LVASVTKGSP
SEKAGLKLSD LIVAVDGFPI DDPNAFDYRF ATRPLGGTAQ IDAQRAGKPV KLTIALETAP
DTGRDEIVLT ARSPFQGAKI ANISPAIADE MRLDPSVEGV VVTELADDAT AANVGFQKGD
IIVAVNNKRI GKTSDLERIT NESARLWRIT LVRGGQQINV TLGG
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