| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3140 |
|---|
| Symbol | |
|---|
| ID | 4023645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3494954 |
|---|
| End bp | 3496036 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637963341 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_570267 |
|---|
| Protein GI | 91977608 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.203317 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.359518 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATGA CGATCGAGAC CATCCGGCAC AGGGTCGGCG CGGCCAGGCC CGTGGCGATC
ACCATCGTCG CGATCGGCGT GGGATTTGCG CTCATCTTTG CGTGGCGACT GATGCGCCAG
CCTGCGGTCA GCACAGGCGC ATCCGCCCCG ATCTCGGCGC CCCTCATGAC AGTCAGCACC
GAGAATGTGC CGCAGTCGCT CGAGGCGGTC GGCACGCTTG AGGCTGTTCG GCAAGTCACT
CTGGCGGCGG AAGTCCCCGG TCGCGTTGTG GCGCTGAGTT TCGACGCGGG GGAAACGGTG
GCGGCCGGCC GCACTCTCAT TCAGCTCTAC GATGCGCCTG AGCGTGCTGA TCTGGCTGCA
GCGCAGGCAC GGGTCGACTT TGCAAAGCAT GAATTCGATC GTTCTCAGGC GTTAGCTCCG
AGCGGCTCTG AGCCGGTACG GATCTATCAG CAGCGCAGGG CTGAGCTCGC CCAAGCACGT
GCGGCGACCG AACAAATTGA AGCGCGCATC GCGCAGAAGG CGGTTCGGGC GCCGTTTGCG
GGTGTGATCG GGCTGCGGAA GGTGAACCTC GGTCAGTACG TCAATGCCGG GGATCGGCTT
GCGACGATCA CGGATCTCGA TCTGCTGTAT GTCAATTTCA CCGTGCCGCA GCAGCGGCTG
GCTGAGCTGG CTGTGGGCGC TCGCGTCACA CTCGTAAGCG ATGCGGTGCC TGGCCGTGAA
TTCATTGCGC GCATGAACGC GATCGAGCCT CAGGTCGGTG TCGATACCCG CAATGTTCAG
GCGCAGGCGA TCCTCGACAA CCGCGACCAC GTCTTGCGAC CGGGTCTCTA CGGGACGGTG
CGAATGACGC TCCCGGCGTT GTCGAATGCG ATCACTGTGC CCACGACGGC CATCATCACA
TCGCCCTCGG GCGATACCGT CCTCGTCGTG CGTGACGACG TGGCGTACTC GGTGTCCGTG
ATCACGGGAG CGCGTATCGG CGACAGGGTC GTCGTCGCGC GCGGACTGGT CGCCGGCGAC
CGCGTGATCA CCGCCGGCCA ATTGCGCGTT CAACCCGGTG TCCGTGTGGC GGCGGCGCGC
TGA
|
|---|
| Protein sequence | MAMTIETIRH RVGAARPVAI TIVAIGVGFA LIFAWRLMRQ PAVSTGASAP ISAPLMTVST
ENVPQSLEAV GTLEAVRQVT LAAEVPGRVV ALSFDAGETV AAGRTLIQLY DAPERADLAA
AQARVDFAKH EFDRSQALAP SGSEPVRIYQ QRRAELAQAR AATEQIEARI AQKAVRAPFA
GVIGLRKVNL GQYVNAGDRL ATITDLDLLY VNFTVPQQRL AELAVGARVT LVSDAVPGRE
FIARMNAIEP QVGVDTRNVQ AQAILDNRDH VLRPGLYGTV RMTLPALSNA ITVPTTAIIT
SPSGDTVLVV RDDVAYSVSV ITGARIGDRV VVARGLVAGD RVITAGQLRV QPGVRVAAAR
|
|---|
| |