Gene RPD_3122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3122 
Symbol 
ID4023627 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3473803 
End bp3475335 
Gene Length1533 bp 
Protein Length510 aa 
Translation table11 
GC content64% 
IMG OID637963323 
Productcarboxyl transferase 
Protein accessionYP_570249 
Protein GI91977590 
COG category[I] Lipid transport and metabolism 
COG ID[COG4799] Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.629263 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.624995 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACATA TCCTTGAAGC ACTCGACGAT CGCCGGGCAG CGGCCAAACT CGGCGGCGGC 
GAGAAGCGCA TCGACGCGCA GCATGCGCGC GGTCGGCTCA CCGCGCGGGA GCGGATCGAC
CTCTTGCTCG ACAAGCATTC GTTCGAGGAA ATGGACATGT TCGTCCAGCA CCGCTCGACC
GAATTCGGAA TGGAGAAGAC GAAAATTCCG GGTGACGGCG TCGTCACCGG CTGGGGCACC
GTCAACGGCC GCAAGACCTT CGTGTTCGCC AAGGACTTCA CCGTGTTCGG CGGCTCGCTG
TCCGAAACCC ACGCCGCCAA GATCACCAAG ATCCAGGACA TGGCGCTGAA GGCGCGGGCG
CCGATCATCG GCCTCTACGA TGCCGGCGGC GCGCGCATCC AGGAAGGCGT CGCGGCGCTG
GCGGGCTATT CCTACGTGTT CCGCCGCGTG GTTCAGGCTT CCGGCGTGAT CCCGCAGATC
AGCGTCATCA TGGGCCCGTG CGCCGGCGGC GACGTCTATG CGCCGGCGAT GACCGACTTC
ATCTTCATGG TGAAGAATAC CAGCTACATG TTCGTCACCG GCCCCGACGT GGTGAAGACC
GTGACCAACG AGGTGGTGAC GCCGGAGGAA CTCGGCGGCG CCAGCGTGCA CGCGACCCGA
TCCTCGATCG CCGACGGCGC ATTCGAGAAC GACGTCGAGA CGCTGCTGCA GATGCGTCGA
CTGCTCGATT TCCTGCCCGC CAACAATGTC GGCGGCGTGC CCGAATGGCC GAGCTTCGAC
GACATCGAGC GCGAGGATTT TTCGCTCGAC ACGCTGATCC CGGACAATCC GAACAAGCCC
TACGACATGA AGGAACTGAT CCTGAAGGTC GTCGACGAGG GCGATTTCTT CGAATTGTCG
GATGCCTTCG CCAAGAACAT CATCACCGGT TTCGGCCGCA TCGCCGGCCG TACCGTCGGC
TTCGTCGCCA ACCAGCCGAT GGTGCTGGCC GGCGTGCTCG ACAGCGACGC CTCGCGCAAG
GCGGCGCGGT TCGTGCGCTT CTGCGACTCG TTCAACATTC CGATCGTCAC CTTCGTCGAC
GTGCCGGGCT TCCTGCCGGG CACCGCGCAG GAATATGGCG GGCTGATCAA GCACGGCGCG
AAGCTGCTGT TCGCGTTCTC GCAGTGCACC GTGCCGCTGG TCACGGTCAT CACCCGCAAG
GCCTATGGCG GCGCGTTCGA CGTGATGGCC TCCAAGGAAA TCGGCGCCGA CGTCAACTAC
GCCTGGCCGA GCGCGCAGAT CGCGGTGATG GGCGCCAAGG GCGCGGTCGA GATCATCTTC
CGCCAGGATA TGAACGACCC GGACAAGATC GCGGCGCGGA CCAAGGAATA CGAGGACCGC
TTCCTGTCGC CGTTCATCGC GGCGGAGCGC GGCTATATCG ACGACGTCAT CATGCCTCAC
GCCACCCGCC GCCGCATCGC CCGCGCGCTG GCGATGCTGC GCGACAAGCA CGTCGACCTG
CCGCCGAAGA AGCACGACAA CATGCCGCTG TAA
 
Protein sequence
MKHILEALDD RRAAAKLGGG EKRIDAQHAR GRLTARERID LLLDKHSFEE MDMFVQHRST 
EFGMEKTKIP GDGVVTGWGT VNGRKTFVFA KDFTVFGGSL SETHAAKITK IQDMALKARA
PIIGLYDAGG ARIQEGVAAL AGYSYVFRRV VQASGVIPQI SVIMGPCAGG DVYAPAMTDF
IFMVKNTSYM FVTGPDVVKT VTNEVVTPEE LGGASVHATR SSIADGAFEN DVETLLQMRR
LLDFLPANNV GGVPEWPSFD DIEREDFSLD TLIPDNPNKP YDMKELILKV VDEGDFFELS
DAFAKNIITG FGRIAGRTVG FVANQPMVLA GVLDSDASRK AARFVRFCDS FNIPIVTFVD
VPGFLPGTAQ EYGGLIKHGA KLLFAFSQCT VPLVTVITRK AYGGAFDVMA SKEIGADVNY
AWPSAQIAVM GAKGAVEIIF RQDMNDPDKI AARTKEYEDR FLSPFIAAER GYIDDVIMPH
ATRRRIARAL AMLRDKHVDL PPKKHDNMPL