| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3116 |
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| Symbol | |
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| ID | 4023621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3465948 |
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| End bp | 3469433 |
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| Gene Length | 3486 bp |
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| Protein Length | 1161 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637963317 |
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| Product | indolepyruvate ferredoxin oxidoreductase |
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| Protein accession | YP_570243 |
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| Protein GI | 162138287 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0262432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.624015 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAATCG ACCAGGGACC GATCAGTCTC GATCAGAAAT ACACCCAGCA TTCCGGACAC
ATCTTTCTCA CCGGCATCCA GGCGCTGGTT CGTCTGCCGA TGGCGCAGGT CCGGCGCGAC
CGCGCCGCGG GGCTGAACAC CGCCGGCTTT GTCACCGGCT ATCGCGGCTC GCCGCTGGGC
GGCTACGACC AGCAGCTCGT CGCGGCGCGG CGCCATCTGG AGCAGTACAA CGTCAAATTC
CAGCCCGGCG TGAACGAGGA CCTCGCGGCT ACCGCAATCT GGGGCTCGCA ACAACTCAAC
CTTTCGCCCG GTGCGCAGTA CGACGGCGTC ACCGGGATCT GGTACGGCAA GGGACCTGGC
GTCGATCGCT GCGGCGACGT GTTCCGCCAC GGCAACGCCG CGGGTTCGGC CAAGAACGGC
GGCGTGCTGT GTCTGGCCGG CGACGATCAC GGCGCCAAAT CCTCGACCGT GCCGCATCAG
TCCGACCACG CCTTCATCGC GGCGCTGATG CCGTATCTGT ATCCGTCGTC GATCCACGAA
ATCATCGAGA TGGGCCTGCT CGGCATTGCG ATGTCGCGCT ATTCCGGCTG CTGGGTCGGC
ATGAAGGTGA TCACCGAGAC GGTGGAGACA ACCGCCGAGA TCAATCTCGC CGACGAGATG
ACGCCGTTCG TCCTCCCGAC CGATTTCGAG ATGCCGCCCG GCGGACTCAA TCTGCGCTGG
CCCGACGATC GCTACGATCA GGACCGCCGG CTGCAGGACT ACAAGGGCTT CGCCGCGATT
GCGTTTGCCC GCGCCAACAA GGTCAACCGC ATCACGATGG ATTCGCCGAA TGCGCGGTTC
GGCATCATGG CGTCCGGCAA GAGCTATGAG GACGTGCGCC AGGCGCTGCG CGAACTCGGC
ATCGACGAGC AGGTCGCCGC GCGCATTGGT CTTCGGCTGT ACAAAATCGG CATGCCGTGG
CCGCTGGAGC CGGAAGGCGT GCGCAACTTC GCGCACGGCC TCGAGGAGAT CTTCGTCGTC
GAGGAACGCC GCGAGATCGT CGAGAACCAG CTCAAGCAGC AACTGTTCAG CACGCGCGAC
CGGCCGCGCG TGATCGGCAA GATGGACGAG CACGAGCATC GATTCCTGCC GTTCGCGCAG
GAACTCAGTG TCGCAAAGGT CGCGACCTCG CTGGTCGACC GCTTGCTGGC GATGGAGATC
GACCCGACGA TCGCCGAGAT GCTGCGCGCC AAGGCCGACT GGTTTCACGG CCGCGACGCC
TCACAGGTGC AGAACGTCGT GCCGATCGCG CGCACGCCGT ATTTCTGCTC GGGCTGTCCG
CACAACACCT CGACCAAGGT GCCGGAAGGC AGCCGCGCGC TGGGCGGCAT CGGCTGTCAC
TTCATGTCGC TGTGGATGGA CCGCAACACC GAGACCTTCA CCCATATGGG CGGCGAGGGC
GTGCCGTGGG TCGGCATCGC GCCGTTCACG GACGAGAAGC ACATCTTCGC CAATCTCGGC
GACGGCACGT ATTTCCATTC CGGCTCGCTG GCGATCCGCC AGTCGGTCGC CTCGAAGGCC
AACATCACCT ACAAGATCCT CTACAACGAC GCGGTGGCGA TGACCGGCGG CCAGCGTCAC
GACGGCGATC TGTCGCCGCA GCAGATCACC TATCAGCTTC ACGCCGAAGG CATCCGCGCG
ATCTATCTGG TGTCGGAAAC GCCCGGCGCC TATCCGGCCG ACAGCATCGC GCCGGGCACG
CATCTGCGCC ATCGTGACGA ACTCGATTCG GTGATGAAGG AGTGTCGGCA GATCGAGGGC
GCCTCCGCGA TCGTGTTCGT GCAGACCTGC GCCGCCGAGA AGCGCCGTCG CCGCAAGCGC
GGCACGCTGG AAGATCCGCC GCGCCGCGTG GTGATCAACG CCGCAGTGTG CGAGGGTTGC
GGCGACTGCT CGGTGCAGTC GAACTGCATC TCGGTCGAGC CGCTGGAGAC CGAACTCGGC
CGCAAGCGGA CGATCAACCA GTCGACCTGC AACAAGGATT ATTCCTGCCT CAAAGGCTTC
TGCCCGTCCT TTGTCACGAT CGACGGCGGC AAGCTGCGCA AGCGCGCGCC GGTCGATCTC
GGCGGCTTCA GCGATCTGCC CGAGCCATTG AGTCGGCCCG GTCTCGACAA GCCCTACAAC
ATCGCCATCG GCGGCGTCGG CGGCACCGGC GTGCTGACGA TCGGCGCGCT GCTCGGGATG
GCGGCGCATA TCGAGGGCAA GGCCTCGATG ATTCTCGACA TGTCGGGCCT CGCGCAGAAG
GGTGGCGCGG TGCTCAGCCA TGTCCGGCTG TCCGAGAAGC CCGAGGAGGT CACCTGTTCG
CGGATCGTCA CCGGCACCGC GGACGTGCTG ATCGTCGCCG ACGAAGTGAT GGCGATTTCC
AAGGAGACGA TCTCGCTGTG CGAGCCGGCC CGTACCCACG GCGTCGTCAA CACGCATCTG
ATCCCGATCG CCGACTTCAT CCGCAATCGC GACTTCGATT TCCAGACCCG CAAGGTCAAC
AGTGTTCTGA AAAGCGCGCT GCGCAAGGAT TCGGCGTTTC TCGATTTCAC CAAGGCGGCG
GAAACGCTGC TCGGGGATTC GATCGCAACC AACATGATGA TGATGGGCTA TGCCTATCAG
CAAGGGCTGC TGCCGGTGAA GGCGGCGTCG ATCGAACAGG CGATCGAGCT GAACGGCGTG
TCGATCAAGA TGAACACCCA GGCGTTCCAA CTCGGCCGGC TCGCCGCCGC CGATCCGGCG
CGGCTGGCGT CGCTGCTCGC GGGCGCCGAC GCGACGGTGG CGCCGAAGAC CCAGGGCGAG
ATGTCGCTCG ACGAGATCAT CGCGCATCGC GGCACGATGC TTACGGATTA TCAGGGCAAT
CGGCTCGCCA CGCGCTACCG TGAACTGGTG GCAAAAGTAC GCGCCGCTGC AGAGGCCGGT
GGCTATGGCG ATGAGCTGCC GCGGGCGGTG GCGATCAACT ACGCCAAGCT GCTTGCTTAC
AAGGACGAGT ACGAGGTCGC CCGGCTGCTG ACGCAGCCGG CCTTCGAACA GCAGATTCGC
GACCAGTTCG ACGGCGACTA CAAGGTCAGC TTCAACCTCG CGCCGCCGAT ACTGCCGGGC
GTCGACGTCA CCGGTCGGCC GAAGAAGCGG CAATTCGGCG AGGGCATGCG GCCGGTGTTC
CGGATGTTGT CGAAACTCAG CTTCTTGCGC GGCACGCCGC TCGATCTGTT CGGCTATCAT
CCGGAGCGCA AGCTCGAACG CGAGTTGATC GCGAACTACG AGGCGGATGT CGCCAGCGTA
GTTTCGTATC TGTCGCCGAG CACGCTCGAC ACCGCGGTCG AACTGCTGTC GCTGCCCGAC
CGCATCCGCG GTTACGGCCC GATCAAGCAG AAATCGGTCG ACGACACCGC GCCGCGCTTC
GCCGAATTGC GCGCGAATTT GCGCGATCCC CGGCCTGCGC CGCCGCGTCA GATGGCGGCT
GAGTAG
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| Protein sequence | MGIDQGPISL DQKYTQHSGH IFLTGIQALV RLPMAQVRRD RAAGLNTAGF VTGYRGSPLG
GYDQQLVAAR RHLEQYNVKF QPGVNEDLAA TAIWGSQQLN LSPGAQYDGV TGIWYGKGPG
VDRCGDVFRH GNAAGSAKNG GVLCLAGDDH GAKSSTVPHQ SDHAFIAALM PYLYPSSIHE
IIEMGLLGIA MSRYSGCWVG MKVITETVET TAEINLADEM TPFVLPTDFE MPPGGLNLRW
PDDRYDQDRR LQDYKGFAAI AFARANKVNR ITMDSPNARF GIMASGKSYE DVRQALRELG
IDEQVAARIG LRLYKIGMPW PLEPEGVRNF AHGLEEIFVV EERREIVENQ LKQQLFSTRD
RPRVIGKMDE HEHRFLPFAQ ELSVAKVATS LVDRLLAMEI DPTIAEMLRA KADWFHGRDA
SQVQNVVPIA RTPYFCSGCP HNTSTKVPEG SRALGGIGCH FMSLWMDRNT ETFTHMGGEG
VPWVGIAPFT DEKHIFANLG DGTYFHSGSL AIRQSVASKA NITYKILYND AVAMTGGQRH
DGDLSPQQIT YQLHAEGIRA IYLVSETPGA YPADSIAPGT HLRHRDELDS VMKECRQIEG
ASAIVFVQTC AAEKRRRRKR GTLEDPPRRV VINAAVCEGC GDCSVQSNCI SVEPLETELG
RKRTINQSTC NKDYSCLKGF CPSFVTIDGG KLRKRAPVDL GGFSDLPEPL SRPGLDKPYN
IAIGGVGGTG VLTIGALLGM AAHIEGKASM ILDMSGLAQK GGAVLSHVRL SEKPEEVTCS
RIVTGTADVL IVADEVMAIS KETISLCEPA RTHGVVNTHL IPIADFIRNR DFDFQTRKVN
SVLKSALRKD SAFLDFTKAA ETLLGDSIAT NMMMMGYAYQ QGLLPVKAAS IEQAIELNGV
SIKMNTQAFQ LGRLAAADPA RLASLLAGAD ATVAPKTQGE MSLDEIIAHR GTMLTDYQGN
RLATRYRELV AKVRAAAEAG GYGDELPRAV AINYAKLLAY KDEYEVARLL TQPAFEQQIR
DQFDGDYKVS FNLAPPILPG VDVTGRPKKR QFGEGMRPVF RMLSKLSFLR GTPLDLFGYH
PERKLERELI ANYEADVASV VSYLSPSTLD TAVELLSLPD RIRGYGPIKQ KSVDDTAPRF
AELRANLRDP RPAPPRQMAA E
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