| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3083 |
|---|
| Symbol | lipB |
|---|
| ID | 4023587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3428436 |
|---|
| End bp | 3429203 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637963283 |
|---|
| Product | lipoate-protein ligase B |
|---|
| Protein accession | YP_570210 |
|---|
| Protein GI | 91977551 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0321] Lipoate-protein ligase B |
|---|
| TIGRFAM ID | [TIGR00214] lipoate-protein ligase B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.372719 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAATT TCCCGCAGCA TCCCCGCCAG ACCCTCGAAC TCGCAGGCTT CCTGCCCGAG
GCCAGCGGGC GCGCGGTCGA ATGGCTGATT TCTGATTCGC AGGTCCCCTA TTCCGAAGCG
GTCGCGGCGA TGGACTCGCG GGCGGCGGCG ATTGCCGCCG GAGACGCCAA CGAGCTCGTC
TGGCTGCTCG AGCATCCGCC GCTCTACACC TCCGGAACCA GCGGCCAGGC TGCCGACCTG
CTCGACCCGC GCTTTCCGCT GCACGCCACC GGACGCGGCG GGCAGCTCAC CTATCACGGC
CCCGGCCAGC GGGTGGCCTA TGTGATGCTG GACCTGAAGC GCCGCCGCCC CGACGTCCGC
GCTTATGTCG CAGCACTCGA GCAATGGATC ATCGCCACGC TGGAGGCGTT CAATGTCCGC
GGCGAGCGGC GCGAGGATCG CGTCGGCGTC TGGGTGGCGC GCCCCGACAA GGGCGTGGGC
CACGAAGACA AGATCGCTGC GATCGGCGTC CGGCTGAAGC GCTGGGTGTC GCTGCACGGC
ATCGCCATCA ACGTCGAGCC GGACCTCGGT CATTTCGCCG CGATCGTGCC CTGCGGAATC
AGCGACCCGC GCTACGGCGT GACCAGCCTG GTCGACCTCG GACTGCCGGT GACGATGACC
GACGTCGACC TCGCGTTGCG CGCGTCGTTC ACCACGATCT TCGGCGCGAC CGTCAACGCG
TCGGGCTCCG AACCGGCGGC AGGCTCCGTG AATTCGTCGT CCGTATGA
|
|---|
| Protein sequence | MINFPQHPRQ TLELAGFLPE ASGRAVEWLI SDSQVPYSEA VAAMDSRAAA IAAGDANELV
WLLEHPPLYT SGTSGQAADL LDPRFPLHAT GRGGQLTYHG PGQRVAYVML DLKRRRPDVR
AYVAALEQWI IATLEAFNVR GERREDRVGV WVARPDKGVG HEDKIAAIGV RLKRWVSLHG
IAINVEPDLG HFAAIVPCGI SDPRYGVTSL VDLGLPVTMT DVDLALRASF TTIFGATVNA
SGSEPAAGSV NSSSV
|
|---|
| |