Gene RPD_3072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3072 
Symbol 
ID4023575 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3419990 
End bp3420784 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content68% 
IMG OID637963271 
Producthypothetical protein 
Protein accessionYP_570199 
Protein GI91977540 
COG category[S] Function unknown 
COG ID[COG1434] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.195617 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCTTCG TGCTCTCCAA GATTCTCGGC TTCTTCCTCC ATCCTTCCAA CACGATCGCG 
ATGATCTGTT TGGCGGGCGT GGTGCTGCTG CTGACGCGAT GGCGGCGCGC CGGTGCGCGG
GTGCTGGGCG TCGGCGTCGT GCTGCTGCTC GTGGCCGGTT ACTCGCCGCT CGGCAGCGTG
CTGTTGCTCA CGCTGTCGGA GCGCTTCCCG CCGTGGCAGT TCAACGGCCG CGCGCCGGAC
GGGATCATCG TGCTCGGCGG CGCGGTCGAC TCCGAGGTCA GCGCCGCGCG GAGTTCGCTG
GAGATCGATT CGTCCGCCGA GCGCGTCGTC GCCGCGCTCG AGCTGGCGCG GCAATATCCG
CAGGCGCGGA TCATCTACAG CGGCGGCAGC GGCAATCTGA TCGCGAATTC GGTGGCCGAA
GCGCCGATCG CAGGCGAGCT GCTTGCCCGT TTCGGCGTTG CGCCGGATCG CGTCGTGCTC
GAAAGCAAGT CACGCACGAC CGCGGAAAAT GCGAGCTTCA CGCGCGAACT GGTGTCGCCG
AAGCCCGGCG AGGTTTGGTT GCTGGTGACC TCGGCGTTTC ATATGCCGCG GTCGATCGAA
GCCTTCCGCG CTGTGGAGTT CGATGTTCAG GCCTATCCGG TGGATTGGCG GACGCGCGGC
TGGCGTGATG CGGCGCTGCC GTTCGACCGG CTGAGCAGCG GCCTCGCGCG CATGGACGTC
GCGGTCCACG AATGGGCCGG CCTGCTGGCC TATCGGCTCG GCGGGAAGGG CGCGGCGCCG
CGACCGTCGC CGTAG
 
Protein sequence
MFFVLSKILG FFLHPSNTIA MICLAGVVLL LTRWRRAGAR VLGVGVVLLL VAGYSPLGSV 
LLLTLSERFP PWQFNGRAPD GIIVLGGAVD SEVSAARSSL EIDSSAERVV AALELARQYP
QARIIYSGGS GNLIANSVAE APIAGELLAR FGVAPDRVVL ESKSRTTAEN ASFTRELVSP
KPGEVWLLVT SAFHMPRSIE AFRAVEFDVQ AYPVDWRTRG WRDAALPFDR LSSGLARMDV
AVHEWAGLLA YRLGGKGAAP RPSP