Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3051 |
Symbol | |
ID | 4023554 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 3395860 |
End bp | 3396903 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637963250 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_570178 |
Protein GI | 91977519 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGACTG GATCAGTCGA CAATACGCTG CTCCGCGCAG CGCTCGTGGC CATGCTCGTG CTGATCGCGC CGGCCGCTGC GCGCGCCGAG GACGCGCCGC CCGCGAAGCA GGACGACGCC ACCCAGAGCA AACCCGAACC GCAAGCGAAG CCGGACCAAG CGCCTGCGAG GCCGGATACC TCCGCTCCTG CAGAGAAGCC CGCCGACAAG CCCACCGATC AGGCGGCCGA GAAGCCTGCG GATCGGGACA CGCGCGAGTC GATTTGCCTG ATGATCGAGT CGGCGGCGAA GGCGCACGAT TTGCCGCTCG AATTCTTCGC CCGTGTGATC TGGCAGGAGA GCCGGTTTCA ACCCGACGCG GTCGGGCCGG TGACGCGCAG CGGCAAGCGT GCGCTGGGCA TCGCACAATT CATGCCGGGC ACCGCGAGCG AGCGCAGCCT GCTCGATCCG TTCGACCCGG TGCAGGCGCT GCCGAAATCA GCCGAGTTTC TCCGTGAGTT GCGCGGCCAG TTCGGCAATC TCGGGCTGGC GGCGGCGGCC TATAATGCCG GTCCGCGCCG GGTGCAGGAA TGGATTGCCG GCACCGGTCC GATGCCGCAG CAGACCCGCT CTTATGTGTA TGCGATCACC GGAACCTCGG TGGATGATTG GGCTGCGGCG GGCCGTCAGG CGAAGCCGCC GGAGACCAGA GCGGATAGCG ACTGCCGAAC GCTGATGGCG CTGCTGCGGC GCGCGCCGAA TCCGTTCGTG GCGCAGCTCG AGCAGCGGGT GAAGCTCGGC GCCGACAAGC CCTGGGGCGT GCAACTCGCG GCCGGCTTCA ATCGCGATCG GGCTCTGGCG ATGTATGCGC GGGCGATGTC GCGGTTAAGC GCGGTGATCG GCGACCAGGA TCCGAGCCTG TCGAGTTCGG TGTTCCGCAG CCGTGGGACG CGGCCGTTCT ATCGCGTGCG GATCGGCGCC GAGACGCGCC CCGAGGCGAA CGTGTTGTGC GACAAGATCC GCCGCGCCGG CAGCGCCTGT CTGGTGTTGC GCAATCGCGG CTGA
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Protein sequence | MTTGSVDNTL LRAALVAMLV LIAPAAARAE DAPPAKQDDA TQSKPEPQAK PDQAPARPDT SAPAEKPADK PTDQAAEKPA DRDTRESICL MIESAAKAHD LPLEFFARVI WQESRFQPDA VGPVTRSGKR ALGIAQFMPG TASERSLLDP FDPVQALPKS AEFLRELRGQ FGNLGLAAAA YNAGPRRVQE WIAGTGPMPQ QTRSYVYAIT GTSVDDWAAA GRQAKPPETR ADSDCRTLMA LLRRAPNPFV AQLEQRVKLG ADKPWGVQLA AGFNRDRALA MYARAMSRLS AVIGDQDPSL SSSVFRSRGT RPFYRVRIGA ETRPEANVLC DKIRRAGSAC LVLRNRG
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