| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3034 |
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| Symbol | |
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| ID | 4023537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3381579 |
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| End bp | 3383924 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637963233 |
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| Product | ribonuclease R |
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| Protein accession | YP_570161 |
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| Protein GI | 91977502 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0258557 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.241672 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCAAGA CGCGCGACGC AACTTTCCCG GACAAGGCCA CGCTCGTCGC CTTCATCCGC
GCGCATCCAG GCAAGGTCGG CACCCGCGAG ATCGCGCGGG AGTTCGGCCT GAAGAATGCT
GACCGCGCCG AACTCAAGCG GATGATCCGC GAATTGTCCG ACGACGGCAC GATCCGCAAA
AGCGGCCGGC GCAAGATCGC GGAGCCCGCT GCCCTGCCCC CGACCTTGCT GGCGGACATC
ACCGCGCGCG ACAGCGATGG CGAACTGATC GCCACGCCGG CGGAATGGGA CGAGCAGGAT
GGCGATCCGC CCAGGATCCG CATCCACGTT CCGCGCCGCG CCAAGCCGGG CACCGCAGCC
GGCCTCGGCG ATCGTGCGCT TCTGCATGTC GAGCCGGCGG AAGCGTCCGA CAACGGACCG
GCCTATGTCG GCCGCGTCAT CCGTGTGCTC GACCGCGGCA AGCCGCGGAT TCTCGGCATT
TTCCGCGTCC AGCCGCAGGG CGGTGGCCGG CTGGTGCCGG TCGACAAGAA ACAGGCCGGG
CGCGAACTCA ACATCGCCGC GCACGATGCC GGCGGCGCGC AGGATGGCGA TCTCGTCAGC
GTCGAACTGA TCCGCGCCCG CGGCTACGGA TTGTCGTCCG GCCGGGTGAA GGAACGGCTC
GGCTCGCTCG CGACCGAAAA GGCGGTCAGC CTGATCGCGA TCCACTCCCA CGACATTCCA
CAGGAATTCG CCCCCGCGGC GCTGCGCGAA TCCGAAGCCG CAGAGCCCGC GACGCTGAAA
GGCCGCGAAG ACTGGCGCAG CCTGCCGCTG GTGACGATCG ATCCGCCCGA CGCCAAGGAC
CACGACGACG CGGTCCACGC CGAGCCCGAC CCCGATCCCG CCAACAAAGG CGGCGTGATC
CTTCATGTCG CGATCGCCGA CGTCGCCTAT TACGTGCGGC CGGAGTCAGC GCTCGATCAC
GACGCGTTGC GGCGCGGCAA TTCGGTGTAC TTCCCCGACC GCGTCGTACC GATGCTGCCG
GAACGGATCT CCAACGATCT GTGCTCGTTG AAGCCCGGCG AGCCGCGCGG CGCGCTCGCG
GTGCGGATGG TGATGGACGC CGATGGCCGC AAGCGCTCGC ACTCGTTCCA CCGCGTGCTG
ATGCGCTCGG CGGCGAAGCT GAACTACGCG CAGGCGCAGG CCGCGATCGA CGGCCACCCC
GACGACGTCA CCGGCCCGCT GCTGGAGACG ATCCTCAAGC CGCTGTACGA CGCCTATGCG
ATCGTCAAGC GCGGCCGCGA CGAACGCGAC CCTCTCGATC TCGATCTGCC CGAGCGCAAG
ATCCTGCTGA AGCCCGACGG CACGGTCGAT CGCGTCATCG TGCCCGAGCG GCTCGACGCG
CACAGATTGA TCGAGGAATT CATGATCCTC GCCAATGTCG CTGCGGCGGA AATGCTGGAG
AAGAAGGCGC TGCCGCTGAT CTATCGGGTG CACGACGAAC CGACCGTTGA GAAGGTCCAT
AACCTCGTCG ACTTCCTGAA GACGCTCGAT CTGTCCTTCG CCAAAGGCGG CGCAATGCGA
CCGGCGCAGT TCAATCGCAT CCTGGCGATG GTGAAGGGTC ACGACGCCGA ACTGCTCGTC
AACGAAGTCG TGCTGCGCTC GCAGGCGCAG GCGGAATACG CCTCGGAGAA TTACGGTCAT
TTCGGCCTGA ACCTGCGCCG CTACGCGCAT TTCACCTCGC CGATCCGCCG CTACGCCGAT
CTCGTGGTCC ACCGCGCGCT GATCCGCGCG CTCGATCTCG GCGACGGCGC GTTGCCACAA
ACCGAAACGG TGGAAACGCT CGCCGAAGTC GCGGCGCAGA TTTCGGTGAC GGAACGCCGC
GCCATGAAGG CGGAACGCGA GACCGTCGAC CGGCTGATCG CGCATCACCT CGCCGACCGG
ATCGGCGCGA CCTTCCAGGG CCGGATTTCC GGGGTCACCA AGGCCGGTTT GTTCGTCAAG
CTGAGCGACA CCGGCGCCGA CGGGCTGATC CCGATCCGGA CGCTCGGCGA CGAATACTAC
AACTATGACG AGACCCGCCA CGCGCTGATC GGCTCGCGCA GTGGTGCCAT GCATCGGCTG
GGGGATGTCG TCGACGTCCG TCTGGTCGAA GCTGCACCGG TGGCCGGCGC GCTGCGGTTC
GAACTGCTCA GTGAATCACG CAGCGTCGTG CGCGGGCAGC GCAAAGGCCC ACACAAGACC
AAAGGGAAGG AACAGGCGAC GAGCAAAGCC GCCATCGGGC GCAGCTCGCG CGGCAAGGCC
CGCAAGGCGA AGGTCGCCAA GCCGCCGAAG CGCAAGCCGA ACAAGCCCGG AAAGGGAAAG
CGATGA
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| Protein sequence | MSKTRDATFP DKATLVAFIR AHPGKVGTRE IAREFGLKNA DRAELKRMIR ELSDDGTIRK
SGRRKIAEPA ALPPTLLADI TARDSDGELI ATPAEWDEQD GDPPRIRIHV PRRAKPGTAA
GLGDRALLHV EPAEASDNGP AYVGRVIRVL DRGKPRILGI FRVQPQGGGR LVPVDKKQAG
RELNIAAHDA GGAQDGDLVS VELIRARGYG LSSGRVKERL GSLATEKAVS LIAIHSHDIP
QEFAPAALRE SEAAEPATLK GREDWRSLPL VTIDPPDAKD HDDAVHAEPD PDPANKGGVI
LHVAIADVAY YVRPESALDH DALRRGNSVY FPDRVVPMLP ERISNDLCSL KPGEPRGALA
VRMVMDADGR KRSHSFHRVL MRSAAKLNYA QAQAAIDGHP DDVTGPLLET ILKPLYDAYA
IVKRGRDERD PLDLDLPERK ILLKPDGTVD RVIVPERLDA HRLIEEFMIL ANVAAAEMLE
KKALPLIYRV HDEPTVEKVH NLVDFLKTLD LSFAKGGAMR PAQFNRILAM VKGHDAELLV
NEVVLRSQAQ AEYASENYGH FGLNLRRYAH FTSPIRRYAD LVVHRALIRA LDLGDGALPQ
TETVETLAEV AAQISVTERR AMKAERETVD RLIAHHLADR IGATFQGRIS GVTKAGLFVK
LSDTGADGLI PIRTLGDEYY NYDETRHALI GSRSGAMHRL GDVVDVRLVE AAPVAGALRF
ELLSESRSVV RGQRKGPHKT KGKEQATSKA AIGRSSRGKA RKAKVAKPPK RKPNKPGKGK
R
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