| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3028 |
|---|
| Symbol | pyrB |
|---|
| ID | 4023531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3373564 |
|---|
| End bp | 3374517 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637963227 |
|---|
| Product | aspartate carbamoyltransferase catalytic subunit |
|---|
| Protein accession | YP_570155 |
|---|
| Protein GI | 91977496 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0540] Aspartate carbamoyltransferase, catalytic chain |
|---|
| TIGRFAM ID | [TIGR00670] aspartate carbamoyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.285295 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.682803 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCCG CATTGAAATC GACCTTTGTC CTCGCTCACC GGCATTTGCT GGGCATCGAA
GGGCTTTCCG CCGCCGACAT CACCGGCCTG CTCGACCTGT CCGAGGAATA TGTCGAGCTC
AACCGGCAGG TCGACAAGAA GCGCGCCTCG TTGCGCGGCC GCACCCAGGT CAATCTGTTC
TTCGAGGCCT CGACGCGGAC GCAGTCTTCG TTCGAGATCG CCGGCAAAAG GCTCGGCGCC
GACGTCATGA ACATGTCGGT GTCGTCGTCC TCGATGCGCA AGGGCGAGAC GCTGATGGAC
ACCGCGGTGA CGCTCAACGC GATGCACCCG GACATCCTCG TCGTCCGGCA TCACGCCTCG
GGCGCTGTCG AGCTGCTCGC GCGAAAAGTC GACGGCTCGG TGATCAATGC CGGCGACGGC
GCGCACGAGC ATCCGACCCA GGCGCTGCTC GACGCGCTGA CGATCCGCCG CAACAAGGGC
CGGCTCGAAG GGCTGGTGGT CGCGATCTGC GGCGACGTCA TGCATTCGCG CGTGGCCCGC
TCCAACATCC TGTTGCTCAA CACCATGGGC GCGCGCGTCC GCGTGGTCGC GCCGTCGACG
CTGCTGCCCC GCGGCATCGA GCGGATGGGC GTCGAGGTCG CGCGCGACAT GCGCGAAGGT
CTCGACGGCG CCGACATCGT GATGATGCTG CGGCTGCAGC GCGAGCGGAT GAACGGCTCG
TTCGTGCCCT CCTCGCAGGA ATACTTCCAT TATTTCGGGC TCGACCAGAA GAAACTGGCC
TATGCCAAGC CCGACGCGCT GGTGATGCAT CCGGGGCCGA TGAATCGCGG AGTCGAGATC
GACTCGATCG TCGCCGACGG CGCGCAGTCG GTGATCCGCG AACAGGTGGA AATGGGCGTG
GCGGTGCGGA TGGCGGTGCT CGAAGCGCTC GCCCGCAACC TGCCCAACGC TTGA
|
|---|
| Protein sequence | MTPALKSTFV LAHRHLLGIE GLSAADITGL LDLSEEYVEL NRQVDKKRAS LRGRTQVNLF
FEASTRTQSS FEIAGKRLGA DVMNMSVSSS SMRKGETLMD TAVTLNAMHP DILVVRHHAS
GAVELLARKV DGSVINAGDG AHEHPTQALL DALTIRRNKG RLEGLVVAIC GDVMHSRVAR
SNILLLNTMG ARVRVVAPST LLPRGIERMG VEVARDMREG LDGADIVMML RLQRERMNGS
FVPSSQEYFH YFGLDQKKLA YAKPDALVMH PGPMNRGVEI DSIVADGAQS VIREQVEMGV
AVRMAVLEAL ARNLPNA
|
|---|
| |