| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3027 |
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| Symbol | |
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| ID | 4023530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3371750 |
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| End bp | 3373381 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963226 |
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| Product | thiamine pyrophosphate enzyme-like TPP binding region |
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| Protein accession | YP_570154 |
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| Protein GI | 91977495 |
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| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
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| TIGRFAM ID | [TIGR03394] indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.306897 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.499119 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACGC TTGCGACCGC ATTGCTCGAC GCGCTCAAGG ATCACGGCGC CAAGGAGATT
TTTGGCATTC CCGGGGATTT TGTGCTGCCG TTCTTCAAGG TGATCGAGGA GAGCGGAACG
CTACCCTATT TCACGGTGAG CCATGAGCCG GCAGTCGGCT TTGCGGCGGA TGCCGCGTCA
CGCTATCGCG GCGGCATCGG CGTCGCGGTG GTGACCTATG GCGCAGGCGC ATTCAATCTC
GTCAATTCGA TCGCCGGCGC TTATGCGGAG CGTTCGCCGG TGGTGGTAAT CGCCGGTGCG
CCGGGCGCGC GTGAGCGAAC CAGCGGCTAT CTGCTGCATC ACCAGGTCCG CACCGTCGAC
ACGCAGCTTG CGGTATTCAA GGAAGTGACC TGCGCGCAGG CGGTGCTAGA CGACCCGCTC
ACGGCGCCGG CCGAAATCGC GCGGGTGCTG CGCTGCGCGC TGGAACTGTC GCTGCCGGTC
TATATCGAAT TCCCGCGCGA CATGGTCGAC GCCAAGGTCG ACCCGGTGGT GAAGCTGCCG
CAGCGCGAGG CCGATCCCGG TGCGCTTGCC GAATGCTCCG AAGAGATCCT CGCCCGGATC
GCCAAGGCGA AATCGCCGGT GGTGGTGGTC GATGTCGAAA TCCGCCGTTA CGGCGTGGAG
AAGCAGGTCG CCGCGCTCGC GCGCAAGCTC GGCCTGCCGG TGGTGACGAC GTTCATGGGC
CGCGGCCTGC TCGAAGGCGA CGACGACGTC GTCGCCGGCA CCTATCTCGG CGCCGCCGGC
GATTCCGGAT TGTCGGCGCT GGTGGAAGAG TCCGATCTGG TGCTGATGTT CGGCGTGATC
CTGTCCGATA CCAATTTCGC GCTGTCGACC AACATGACCG ATCCGCGCCG CACCGTGCTC
GCCACCGGCC GTGAGGTGCA GATCGGCCAT CACGTCTATC GCGATTTGCC GCTTGCCGAC
CTGATCGCGG GGCTCGACGC CCACGCCACG CAGCATCCGC CGCGGCCGCG CAACGCCGGG
CAGGGCATGG TCTATCCGCG CAACCTCGTC GCCGATGCGA GCGCGATCGC GCCGTCCGAC
ATCGCGACCG CGATCAACGA TCTGTTCGAC CGACACGGCA AGATGCCGAT GACCGCAGAC
ATCGGCGATT GCCTGTTCAC CGCAATGGAA ATCGACAACA CCGCGCTGGC GGCGCCGGGC
TACTACGCCG GCATGGGTTT TGGCGTGCCG GCCGGGTTCG GTGTCGCCGC CACCGGATTG
CGGCCGCTGA TCCTGGTCGG CGATGGCGCG TTCCAGATGA CCGGGTGGGA GCTCGGCAAT
TGCAAGCGCT ACGGGCTCGA TCCGATCGTG GTGCTGTTCA ACAATTGCAG CTGGGAGATG
CTGCGGGTGT TCCAGCCGGA GTCGAAATTC AACGACCTCG ACGACTGGCA CTTCGCCGAC
ATCGCGCCGT CGATCGGCGG CCATGGCGTG CGCGTCACAA CGCGGGCCGA ACTCGCCGCG
GCGCTCGATG CCGCGGTCAA GCGACGCGGG CAGTTCTCGT TGATCGAAGT GATGCTGCCG
CGCGGCGCCA CCTCGCATAC GCTGGCGCGG TTCGTGGCCG GCTTCAAGGC CGCGCGCGAG
CGGATGAAGT GA
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| Protein sequence | MPTLATALLD ALKDHGAKEI FGIPGDFVLP FFKVIEESGT LPYFTVSHEP AVGFAADAAS
RYRGGIGVAV VTYGAGAFNL VNSIAGAYAE RSPVVVIAGA PGARERTSGY LLHHQVRTVD
TQLAVFKEVT CAQAVLDDPL TAPAEIARVL RCALELSLPV YIEFPRDMVD AKVDPVVKLP
QREADPGALA ECSEEILARI AKAKSPVVVV DVEIRRYGVE KQVAALARKL GLPVVTTFMG
RGLLEGDDDV VAGTYLGAAG DSGLSALVEE SDLVLMFGVI LSDTNFALST NMTDPRRTVL
ATGREVQIGH HVYRDLPLAD LIAGLDAHAT QHPPRPRNAG QGMVYPRNLV ADASAIAPSD
IATAINDLFD RHGKMPMTAD IGDCLFTAME IDNTALAAPG YYAGMGFGVP AGFGVAATGL
RPLILVGDGA FQMTGWELGN CKRYGLDPIV VLFNNCSWEM LRVFQPESKF NDLDDWHFAD
IAPSIGGHGV RVTTRAELAA ALDAAVKRRG QFSLIEVMLP RGATSHTLAR FVAGFKAARE
RMK
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