| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3026 |
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| Symbol | |
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| ID | 4023529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3370980 |
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| End bp | 3371696 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963225 |
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| Product | peptidase M15D, vanX D-ala-D-ala dipeptidase |
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| Protein accession | YP_570153 |
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| Protein GI | 91977494 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2173] D-alanyl-D-alanine dipeptidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.138377 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.42057 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGCGA CGCCGGCGTG CGCACAGCCG CTGCCCGACG ACTTCGTCTA TCTGCGTGAT
CTCGACCCGG GCATCCGTCA GGACATCCGC TATGCGGGCG TCAACAATTT CGTCGGCCGG
CCGCTGGCGG GCTACGACGC GAACGAGTGC ATTGTGAAGC GGTCGGTCGG GCTCGCTCTG
CAGAACGTGC AGCGCGAGCT TGCGCAGCAG CGGCTGTCGC TGAAGATGCT GGATTGCTAT
CGGCCGGCGC GGGCTTCGCG CGACATGGTG GCATGGGCGC AGGATGGCCG CGAGACCGAA
GCGCAGAGGC GCTACAATCC GGGCTTCAGC AAGCGCGATT TGTTCCGCCT CGGCTACATC
GCCGAAGTTT CCGGCCACTC CACCGGCGCA GCGGTCGATC TGACCATCGT CGATCTCCGC
GCGCCAAAGG GACCCGCGTT CGATCCGAAC CGCGTCTATG CCGATTGCAC CGCGCCGGAA
TCGCGCCGCG CGCCGGAGGA CAGCGTCGAC ATGGGCGCCG GCTACGACTG TTCGGACGCC
AAGGCGCACA CCGCGGCAAA ATCGATCACC GCAGATCAAC GCCGCTGGCG CAAGCTGTTG
GTGGCGGCGA TGGCGCGGCA GGGCTTCGTC AATTTCAGCA AGGAATGGTG GCACTTCTCG
CTGCCGGGTG TCGGCAAGCA AGCCTATGAT TTCCCGATCG CGCGACGGAT GCGGTAA
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| Protein sequence | MLATPACAQP LPDDFVYLRD LDPGIRQDIR YAGVNNFVGR PLAGYDANEC IVKRSVGLAL
QNVQRELAQQ RLSLKMLDCY RPARASRDMV AWAQDGRETE AQRRYNPGFS KRDLFRLGYI
AEVSGHSTGA AVDLTIVDLR APKGPAFDPN RVYADCTAPE SRRAPEDSVD MGAGYDCSDA
KAHTAAKSIT ADQRRWRKLL VAAMARQGFV NFSKEWWHFS LPGVGKQAYD FPIARRMR
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