| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3008 |
|---|
| Symbol | panB |
|---|
| ID | 4023511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3353018 |
|---|
| End bp | 3353842 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637963207 |
|---|
| Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| Protein accession | YP_570135 |
|---|
| Protein GI | 91977476 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
|---|
| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.697302 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.391158 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTTC AATCGGCCAT CAAACGGAAA ACCGCCCCGG ATATCCGCGC ACGCAAGGGC
GGGGACCCGA TCGTGATGCT GACCTCGTAT CACGCTCACA CCGCGTCGCT GGTCGACCGC
TATTGCGACG TCATCCTGGT CGGAGACTCG CTCGGCAACG TCATGCACGG CTTCGAGACC
ACCGTGCCGG TCACGCTGGA GATGATGATC CTGCAGGGCC ACGCGGTGAT GCGCGGCTCG
CAGCATGCGC TGGTGGTGGT CGACATGCCG TTCGGCTCCT ACGAGGCGTC GAAGGAGCAG
GCGTTCCACT CCGCCGCCCG CATCCTCAAG GAGACCCAGT GCGGGGCCGT GAAGCTCGAA
GGCGGCGTGC GGATGGCGGA GACGATCGCC TTCCTCACCG AGCGCGGCAT TCCGGTGATG
GGCCATATCG GGCTGACCCC GCAATCGATC AACACGCTGG GTTCGTTCCG CGCGCAGGGC
CGCGAGGAGG GGAGCTGGGA GCCGATCGAG GCCGACGCCC GCGCCGTCTC CGACGCCGGC
GCGTTTTCCG TCGTGGTCGA GGCGGTGGCC GAGCCGCTCG GGCGCAAGAT CACCGAGACG
ATTGCGATCC CGACCATCGG CATCGGTGCC AGCGCCGCCT GCGATGGTCA GGTGCTCGTG
CTCGAAGACA TGCTCGGTCT GTCGCCGCGC GCACCGAAAT TCGTCAAGCG CTATGGCGAA
CTCGGGCCGG GCATCGAGGC GGCGATCAAG GGCTTCGCCG AAGAGGTCCG GTCACGCGCG
TTCCCGGGGC CGGAACACGT CTACGGCATG AAGACGAAGA GCTGA
|
|---|
| Protein sequence | MSVQSAIKRK TAPDIRARKG GDPIVMLTSY HAHTASLVDR YCDVILVGDS LGNVMHGFET
TVPVTLEMMI LQGHAVMRGS QHALVVVDMP FGSYEASKEQ AFHSAARILK ETQCGAVKLE
GGVRMAETIA FLTERGIPVM GHIGLTPQSI NTLGSFRAQG REEGSWEPIE ADARAVSDAG
AFSVVVEAVA EPLGRKITET IAIPTIGIGA SAACDGQVLV LEDMLGLSPR APKFVKRYGE
LGPGIEAAIK GFAEEVRSRA FPGPEHVYGM KTKS
|
|---|
| |