Gene RPD_3003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3003 
Symbol 
ID4023506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3343763 
End bp3348850 
Gene Length5088 bp 
Protein Length1695 aa 
Translation table11 
GC content67% 
IMG OID637963202 
ProductOuter membrane autotransporter barrel 
Protein accessionYP_570130 
Protein GI91977471 
COG category 
COG ID 
TIGRFAM ID[TIGR01414] outer membrane autotransporter barrel domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.277946 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGCCC TCACGGAAAG CACGCAGCGT GGCGATCCTT GCCTGGACCA GTGTAGATCG 
CCTGCCGCGC GCTTCTCCGC AGCCGTCGCC GCGCTGATAT CGCCGTTGGT ATGCAGAGCT
CACTTAATTC TGTGGCTCAC CTCAGCCTGC ATCGTCTCGG TACTCACGCC AACGCTGAGT
TGGGCATCGG CGAGCTGCAC GGCGGTAAAC GGCAGCGCCT TGAATTATAG CGTGTCGTTC
TCGTCGCCGG GCAACCCCGA CGACGGAAAG GGATTCAACG AGGCCTACCT GATGTCGTTC
GCTACTGGCG ACACCATCCA TTATTCCGTG ACGATATCCA CGATAGCGGG CACAATCGAC
GCCGGATTTA TCGCTGACTA TTCGTTCGGT ATTCCAACGA CTTTCAATAA TAATCTCAGC
GGTGCCGGAT TCCATACCAG CACCTCCGGC AGCTACACAC TGTCGGCCAG CGACGTGATG
AAGATCAACA GCAATCCGGA CGGATCGTGG ACTCCGGGTC TTTCTTCGCA AGCGATCGAC
CATACCTTCA GTGGATTTCT AGGCAGCGTC TCGTTCTCGG CTACCTGCAC TGCAGCAGGT
AGTCCAACGG TCTCGTCGGT CTCGCCGTCG TCCGGCCCGA CCGCCGGCGG CACTTCGGTA
ACCATCACCG GCACGAATTT CGGTGGCGCT ACCTCGGTGA GCTTCGGCTC GAACTCGGTG
CCGAGCAGCA GCTTCACAAG CAGCTCTGCA ACCCAAATCG TCGTGCCGTC GCCGGCCGGC
AGTGCCGGCA CCGTGCACGT CACCGTGACC AACGCCATCG GCACGTCGCC GACGAGCTCC
AGCGATCAAT TTACCTATGT GGCGGCTCCG ACGATCGGCT CGATCTCGCC GAGCTCAGGC
CCAACCACCG GCGGGACCAG CGTCACCATC ACCGGCACCA ACCTGTCCGG GGTCACCGGC
GTCACCGTCG GCGGCGCATC GGCGACGCTC GGCGCCAATA CGTCGACGTC GATTGCGATC
ACCACGCCGT CCGGAACGGC AGGGGCACGC GATGTCGTGG TGACAACTGC GGGCGGTTCG
GTCACCTCGA CCGGCGGTTT TGCGTTTATC GCCGCGCCGA CGATCGGTTC GATCTCGCCG
AACTCGGGCC CGACCGGCGG CGGCACCAGC GTCACCATCA CCGGCACCAA CCTGTCCGGG
GTCACCGGCG TCACCGTCGG CGGCGCATCG GCGACGCTCG GCGCCAATAC ATCGACCTCG
ATCGTGATTA CCACGCCGTC CGGAACGGCC GGCGCGCGGG ACGTGGTGGT CACGACCGCG
GGCGGTTCGG TCACCTCGAC CGGCGGGTTT ACGTATATCG CCGCGCCGAC GATCGGTACG
ATCTCGCCGA GCTCTGGCCC GACCGGCGGC GGCACCAGCG TCACCATCAC CGGCACCAAC
TTGTCAGGCG TCACAAGTGT GACGGTCGGC GGGGCATCGG CGACGCTTGG ATCCAATACG
TCGACCTCGA TCGTGATCAC GACGCCGTCC GGGACGGCCG GGGCGCGCGA CGTGATCGTG
ACCACTGCCG GTGGGGCGGT CACCTCGACC GGCGGGTTTA CATATATCGC TGCGCCGACA
ATCGGTACGA TCTCGCCGAG CTCAGGCCCG ACCGGCGGCG GCACCAACGT CACCATCACG
GGTACCAACT TGTCCGGCGT CACCGGTGTG ACGGTCGGCG GGGCATCGGC AACGCTCGGA
ACCAATACGT CGACCTCGAT CGTGATTACC ACGCCGTCCG GGACGGCCGG GGCGCGCGAC
GTGATCGTGA CCACTGCCGG CGGGTCGGCC ACCTCGACCG GCGGCTTCAC CTACATCGCA
GGACCTACCA TCGGCACGAT CTCGCCGAAT TCGGGACCGA CCGCAGGCGG GACCAGCGTC
ACCATCACCG GCACCAATCT GTCGGGTGTC ACCTCGGTCA CCATCGGCGG CGCGGCCGCG
ACGCTCGGGA GCAACACGTC GACATCGATC GTGATCACAA CACCGGCCGG CACGGCCGGG
GCGCGCGATG TCGTGCTGAC CACGGCCGGC GGCTCAGTCA CCTCGACCGG CGGATTCACC
TATGCGGCCG CGCCGACGAT CAGCACCGTT ACGCCAAGCT CCGGTTCGAC CGGCGGCGGC
ACATCGGTGA CGATCACAGG CACCAATCTG TCCGGCGTCA CCTCGGTCAC CGTCGGCGGC
ACGGCCGCGA CGCTCGGGAC CAATACGTCG ACATCGATCG TGATCACAAC GCCGACCGGC
ACGGCCGGGG CGCGCGATGT CGTGCTGACC ACGGCCGGTG GTTCGGTCAC TTCGACCGGC
GGCTTCACCT ATATCCTGTC GCCGTCGATC AGTACGATCT CGCCGAATGC CGGCCCGAGC
GCGGGCGGCA CATCGGTGAC GATCAGCGGC ACCAATCTGT CGGGCGTCAC CTCGGTCACC
ATCGGCGGCG CGGCCGCCAC GCTGGGCACC AACACATCGA CCTCGATCGT CGTGACGACC
CCGGCCGGCA CAGCTGGGGC CCGCGACGTC GTGGTGACGA CCAGCGGTGG CTCGGTTACG
GCGGTCGGCG GCTTCACCTA TGCGGGACCG CCGACGATCG GCACGATATC GCCGAGTTCC
GGACCAACCG GCGGCGGCAC CTCGGTGACC ATCACGGGCA GCAATCTTGC CAACATCACC
AACGTCACCA TCGGCGGGGC GGCCGCATCA CTCGGCGCGA ATACATCCAC ATCGATCGTG
GTGACCACGC CCAGCGGCGC CGTCGGCGCG CGGGACGTCG TCGTGTCGAC CGCGGGAGGA
TCCGTCACCT CGACTGGCGG CTTCACCTAT GTGGCAGCCC CGACCATCAG CTCCATCTCA
CCAAGCTCCG GCTTGGCCGC CGGCGGCACC TCGGTGACCA TCACCGGCAC CAATCTGTCC
GGCGTCACCT CGGTGACCGT CGGCGGTGCG GCGGCAACGC TCGGCATCAA CACCGCGACA
TCGATCGTCA TCACGACTCC GGCCGGCACC GCCGGTGCAC GCGACGTCGT GGTCACGACC
GCGGGCGGCC CCGTCACATC GACCGCCGGC TTCACTTACA TCTCGGCCGC AACGGTGACG
GCGATTTCAC CTGCAGTCGG CCCGATCAGC GGCGGCACAT CGGTCACCAT CACCGGCACG
AACTTCACAG GCGCAACGGC CGTGACCATC GGTGGCGCCG CGGCCACCGG CGTCAGCATC
GTGAACGCCA CCACGATCAC CGCGACCACG TCGGCTCACG CCGCTGGCAA CGTCGACGTC
GTGGTGACGA CCCCCGGTGG CACTGCGACG GGATCCGGCC TTTACAGCTA CGTCTCCGGC
CCGGTCGTCA CCTCGATCAG TCCGGCGAGC GGTCCAAGCG CCGGCGGAAC ATCGGTGACG
ATCACCGGAA GCAACCTGGC CGGGGCGACC GCGGTGAGCT TCGGCGGCGC CGCGGCCACC
GCGGTGAGCG TGACGAGCGC CACCACCATC ACCGCAACGA CGCCGGCACA TGCGGCGGGT
GCGGTCGACG TCACCGTCAC GACGCCCGGC GGCAGCAGCA CCGGCGCCGG CCTTTTCAGC
TACATCGTCG CGGCGACCAC CACCACCCTC ACCTCGTCGC ACAATCCCAG CGAAGCTGGT
CAGCCGGTGA GCTTCACCGC GACGGTGACG GCGAACGGCT CCGTCCCGAC CGGCACCGTT
ACCTTTACTG ACGGCGGCGT GGTGATCGGC TCGGTTGGGC TGTCCGGCGG CGCCGCGACG
CTCACCACCA GCAGCCTGAC GATTGGATCC CACACCATCG TCGCGGCATT CGCCGCCAAC
GCCAGCTTCT CCGCCAGCAC CTCGTCGCCG CTGCTGCAGG CGGTCAACAC GCCGCAGGAC
AGCCTGAAGC TGCGCGCCAT GCAGATCATG GCCAGCAAGA CCATCGCCCA GACCTCCGGC
GCAGCGATTT CGGGCGCGAT CGATACGGCG ATTTCCGAGG GCTTCAACGA CGGCGGCGAG
CTGATCACGC CATCAGGCTC AGGCCTGCGC TTCAACTTCA CTGACGATCT CTCCCAAAGC
AGAGCCGGCA CTCCGGAAAG CACGGTCGAA AGCCGCTGGC CGGCTTTCGC CTCGCACGGC
AGCGGCGCGC CGGGCCATCA GGCAACCGGG TTCGGCCTTG GCGACCCGCA ATCGTCCGGG
CGCGCTCAGG CCCGCTTCGA CGACACGTTC GCGGCGATCG ACCGCAAGCC CGACATCGCC
AAAGCACCGG CCAAGGCGCC GGCCGTGCCG AAGGACTGGC TGATGTGGGC CGAGGTCAAG
GGAGCAAGCA TCGGCCAATG GAATTCAACC AGTACGGCAT CGGTGCTGTC GGGCAATCAG
GTGAATGCGT TGATCGGACT GACGCGAAGG CCGTCCCCGG ACCTGCTGAT CGGTGTTATC
GGCGGTTATG AGACGTTCGA CTACAAGTCG GGCACGCTCA ACGGCCGGCT CAAGGGCGAT
GGCTGGACGA TCGGCTCCTA CGCGGCCTGG CGATCCGCCG CCGGACTACG CTTCGATATC
GCTGGCGCCT ATTCGGGGAT CGGTTACGAC GGCTCGGCCG GCACCGCCTT CGGCAGCTTC
GATGGACGGC GCTGGCTGAT GTCCGGCGGC GTCACTGGCT CCACCGAGGC GTTCGGTTTC
GCGATCGAGC CTTCCGCCAA GGTGTACGCG CTATGGGAGA GCCAGAATGC CTATGTCGAC
TCCCTCGGCA CAACGCAGGC GCAGCGCGAA TTCTTCACTG GCCGGGCCTC GGCCGGGCTC
AAGGTAAGCT ATCCCTGGCT CTACAGCGCG ACGCTGACGC TCGCGCCCTA CACCGGAGTC
TTTGCCGACT ACTACTTCCT CGGCGACAAC GCGGAGACGA TCACGCTCGC TGGCGGGACG
CCGCTGGCGT CGGTGCCTCT GATGGACGGC TGGTCCGCCC GGGTGACCGG GGGCATCGCA
GCGCGGTTCG GCAATGGCGC GGCAGTCGCG GTCGGTGGAG AACTCGGTGG GCTGGGCGGC
ACAGTGCAGA TCTGGACGCT CCGCGGCCGG GCGTCGGTGC CATTCTAA
 
Protein sequence
MKALTESTQR GDPCLDQCRS PAARFSAAVA ALISPLVCRA HLILWLTSAC IVSVLTPTLS 
WASASCTAVN GSALNYSVSF SSPGNPDDGK GFNEAYLMSF ATGDTIHYSV TISTIAGTID
AGFIADYSFG IPTTFNNNLS GAGFHTSTSG SYTLSASDVM KINSNPDGSW TPGLSSQAID
HTFSGFLGSV SFSATCTAAG SPTVSSVSPS SGPTAGGTSV TITGTNFGGA TSVSFGSNSV
PSSSFTSSSA TQIVVPSPAG SAGTVHVTVT NAIGTSPTSS SDQFTYVAAP TIGSISPSSG
PTTGGTSVTI TGTNLSGVTG VTVGGASATL GANTSTSIAI TTPSGTAGAR DVVVTTAGGS
VTSTGGFAFI AAPTIGSISP NSGPTGGGTS VTITGTNLSG VTGVTVGGAS ATLGANTSTS
IVITTPSGTA GARDVVVTTA GGSVTSTGGF TYIAAPTIGT ISPSSGPTGG GTSVTITGTN
LSGVTSVTVG GASATLGSNT STSIVITTPS GTAGARDVIV TTAGGAVTST GGFTYIAAPT
IGTISPSSGP TGGGTNVTIT GTNLSGVTGV TVGGASATLG TNTSTSIVIT TPSGTAGARD
VIVTTAGGSA TSTGGFTYIA GPTIGTISPN SGPTAGGTSV TITGTNLSGV TSVTIGGAAA
TLGSNTSTSI VITTPAGTAG ARDVVLTTAG GSVTSTGGFT YAAAPTISTV TPSSGSTGGG
TSVTITGTNL SGVTSVTVGG TAATLGTNTS TSIVITTPTG TAGARDVVLT TAGGSVTSTG
GFTYILSPSI STISPNAGPS AGGTSVTISG TNLSGVTSVT IGGAAATLGT NTSTSIVVTT
PAGTAGARDV VVTTSGGSVT AVGGFTYAGP PTIGTISPSS GPTGGGTSVT ITGSNLANIT
NVTIGGAAAS LGANTSTSIV VTTPSGAVGA RDVVVSTAGG SVTSTGGFTY VAAPTISSIS
PSSGLAAGGT SVTITGTNLS GVTSVTVGGA AATLGINTAT SIVITTPAGT AGARDVVVTT
AGGPVTSTAG FTYISAATVT AISPAVGPIS GGTSVTITGT NFTGATAVTI GGAAATGVSI
VNATTITATT SAHAAGNVDV VVTTPGGTAT GSGLYSYVSG PVVTSISPAS GPSAGGTSVT
ITGSNLAGAT AVSFGGAAAT AVSVTSATTI TATTPAHAAG AVDVTVTTPG GSSTGAGLFS
YIVAATTTTL TSSHNPSEAG QPVSFTATVT ANGSVPTGTV TFTDGGVVIG SVGLSGGAAT
LTTSSLTIGS HTIVAAFAAN ASFSASTSSP LLQAVNTPQD SLKLRAMQIM ASKTIAQTSG
AAISGAIDTA ISEGFNDGGE LITPSGSGLR FNFTDDLSQS RAGTPESTVE SRWPAFASHG
SGAPGHQATG FGLGDPQSSG RAQARFDDTF AAIDRKPDIA KAPAKAPAVP KDWLMWAEVK
GASIGQWNST STASVLSGNQ VNALIGLTRR PSPDLLIGVI GGYETFDYKS GTLNGRLKGD
GWTIGSYAAW RSAAGLRFDI AGAYSGIGYD GSAGTAFGSF DGRRWLMSGG VTGSTEAFGF
AIEPSAKVYA LWESQNAYVD SLGTTQAQRE FFTGRASAGL KVSYPWLYSA TLTLAPYTGV
FADYYFLGDN AETITLAGGT PLASVPLMDG WSARVTGGIA ARFGNGAAVA VGGELGGLGG
TVQIWTLRGR ASVPF