Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3003 |
Symbol | |
ID | 4023506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 3343763 |
End bp | 3348850 |
Gene Length | 5088 bp |
Protein Length | 1695 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637963202 |
Product | Outer membrane autotransporter barrel |
Protein accession | YP_570130 |
Protein GI | 91977471 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.277946 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGCCC TCACGGAAAG CACGCAGCGT GGCGATCCTT GCCTGGACCA GTGTAGATCG CCTGCCGCGC GCTTCTCCGC AGCCGTCGCC GCGCTGATAT CGCCGTTGGT ATGCAGAGCT CACTTAATTC TGTGGCTCAC CTCAGCCTGC ATCGTCTCGG TACTCACGCC AACGCTGAGT TGGGCATCGG CGAGCTGCAC GGCGGTAAAC GGCAGCGCCT TGAATTATAG CGTGTCGTTC TCGTCGCCGG GCAACCCCGA CGACGGAAAG GGATTCAACG AGGCCTACCT GATGTCGTTC GCTACTGGCG ACACCATCCA TTATTCCGTG ACGATATCCA CGATAGCGGG CACAATCGAC GCCGGATTTA TCGCTGACTA TTCGTTCGGT ATTCCAACGA CTTTCAATAA TAATCTCAGC GGTGCCGGAT TCCATACCAG CACCTCCGGC AGCTACACAC TGTCGGCCAG CGACGTGATG AAGATCAACA GCAATCCGGA CGGATCGTGG ACTCCGGGTC TTTCTTCGCA AGCGATCGAC CATACCTTCA GTGGATTTCT AGGCAGCGTC TCGTTCTCGG CTACCTGCAC TGCAGCAGGT AGTCCAACGG TCTCGTCGGT CTCGCCGTCG TCCGGCCCGA CCGCCGGCGG CACTTCGGTA ACCATCACCG GCACGAATTT CGGTGGCGCT ACCTCGGTGA GCTTCGGCTC GAACTCGGTG CCGAGCAGCA GCTTCACAAG CAGCTCTGCA ACCCAAATCG TCGTGCCGTC GCCGGCCGGC AGTGCCGGCA CCGTGCACGT CACCGTGACC AACGCCATCG GCACGTCGCC GACGAGCTCC AGCGATCAAT TTACCTATGT GGCGGCTCCG ACGATCGGCT CGATCTCGCC GAGCTCAGGC CCAACCACCG GCGGGACCAG CGTCACCATC ACCGGCACCA ACCTGTCCGG GGTCACCGGC GTCACCGTCG GCGGCGCATC GGCGACGCTC GGCGCCAATA CGTCGACGTC GATTGCGATC ACCACGCCGT CCGGAACGGC AGGGGCACGC GATGTCGTGG TGACAACTGC GGGCGGTTCG GTCACCTCGA CCGGCGGTTT TGCGTTTATC GCCGCGCCGA CGATCGGTTC GATCTCGCCG AACTCGGGCC CGACCGGCGG CGGCACCAGC GTCACCATCA CCGGCACCAA CCTGTCCGGG GTCACCGGCG TCACCGTCGG CGGCGCATCG GCGACGCTCG GCGCCAATAC ATCGACCTCG ATCGTGATTA CCACGCCGTC CGGAACGGCC GGCGCGCGGG ACGTGGTGGT CACGACCGCG GGCGGTTCGG TCACCTCGAC CGGCGGGTTT ACGTATATCG CCGCGCCGAC GATCGGTACG ATCTCGCCGA GCTCTGGCCC GACCGGCGGC GGCACCAGCG TCACCATCAC CGGCACCAAC TTGTCAGGCG TCACAAGTGT GACGGTCGGC GGGGCATCGG CGACGCTTGG ATCCAATACG TCGACCTCGA TCGTGATCAC GACGCCGTCC GGGACGGCCG GGGCGCGCGA CGTGATCGTG ACCACTGCCG GTGGGGCGGT CACCTCGACC GGCGGGTTTA CATATATCGC TGCGCCGACA ATCGGTACGA TCTCGCCGAG CTCAGGCCCG ACCGGCGGCG GCACCAACGT CACCATCACG GGTACCAACT TGTCCGGCGT CACCGGTGTG ACGGTCGGCG GGGCATCGGC AACGCTCGGA ACCAATACGT CGACCTCGAT CGTGATTACC ACGCCGTCCG GGACGGCCGG GGCGCGCGAC GTGATCGTGA CCACTGCCGG CGGGTCGGCC ACCTCGACCG GCGGCTTCAC CTACATCGCA GGACCTACCA TCGGCACGAT CTCGCCGAAT TCGGGACCGA CCGCAGGCGG GACCAGCGTC ACCATCACCG GCACCAATCT GTCGGGTGTC ACCTCGGTCA CCATCGGCGG CGCGGCCGCG ACGCTCGGGA GCAACACGTC GACATCGATC GTGATCACAA CACCGGCCGG CACGGCCGGG GCGCGCGATG TCGTGCTGAC CACGGCCGGC GGCTCAGTCA CCTCGACCGG CGGATTCACC TATGCGGCCG CGCCGACGAT CAGCACCGTT ACGCCAAGCT CCGGTTCGAC CGGCGGCGGC ACATCGGTGA CGATCACAGG CACCAATCTG TCCGGCGTCA CCTCGGTCAC CGTCGGCGGC ACGGCCGCGA CGCTCGGGAC CAATACGTCG ACATCGATCG TGATCACAAC GCCGACCGGC ACGGCCGGGG CGCGCGATGT CGTGCTGACC ACGGCCGGTG GTTCGGTCAC TTCGACCGGC GGCTTCACCT ATATCCTGTC GCCGTCGATC AGTACGATCT CGCCGAATGC CGGCCCGAGC GCGGGCGGCA CATCGGTGAC GATCAGCGGC ACCAATCTGT CGGGCGTCAC CTCGGTCACC ATCGGCGGCG CGGCCGCCAC GCTGGGCACC AACACATCGA CCTCGATCGT CGTGACGACC CCGGCCGGCA CAGCTGGGGC CCGCGACGTC GTGGTGACGA CCAGCGGTGG CTCGGTTACG GCGGTCGGCG GCTTCACCTA TGCGGGACCG CCGACGATCG GCACGATATC GCCGAGTTCC GGACCAACCG GCGGCGGCAC CTCGGTGACC ATCACGGGCA GCAATCTTGC CAACATCACC AACGTCACCA TCGGCGGGGC GGCCGCATCA CTCGGCGCGA ATACATCCAC ATCGATCGTG GTGACCACGC CCAGCGGCGC CGTCGGCGCG CGGGACGTCG TCGTGTCGAC CGCGGGAGGA TCCGTCACCT CGACTGGCGG CTTCACCTAT GTGGCAGCCC CGACCATCAG CTCCATCTCA CCAAGCTCCG GCTTGGCCGC CGGCGGCACC TCGGTGACCA TCACCGGCAC CAATCTGTCC GGCGTCACCT CGGTGACCGT CGGCGGTGCG GCGGCAACGC TCGGCATCAA CACCGCGACA TCGATCGTCA TCACGACTCC GGCCGGCACC GCCGGTGCAC GCGACGTCGT GGTCACGACC GCGGGCGGCC CCGTCACATC GACCGCCGGC TTCACTTACA TCTCGGCCGC AACGGTGACG GCGATTTCAC CTGCAGTCGG CCCGATCAGC GGCGGCACAT CGGTCACCAT CACCGGCACG AACTTCACAG GCGCAACGGC CGTGACCATC GGTGGCGCCG CGGCCACCGG CGTCAGCATC GTGAACGCCA CCACGATCAC CGCGACCACG TCGGCTCACG CCGCTGGCAA CGTCGACGTC GTGGTGACGA CCCCCGGTGG CACTGCGACG GGATCCGGCC TTTACAGCTA CGTCTCCGGC CCGGTCGTCA CCTCGATCAG TCCGGCGAGC GGTCCAAGCG CCGGCGGAAC ATCGGTGACG ATCACCGGAA GCAACCTGGC CGGGGCGACC GCGGTGAGCT TCGGCGGCGC CGCGGCCACC GCGGTGAGCG TGACGAGCGC CACCACCATC ACCGCAACGA CGCCGGCACA TGCGGCGGGT GCGGTCGACG TCACCGTCAC GACGCCCGGC GGCAGCAGCA CCGGCGCCGG CCTTTTCAGC TACATCGTCG CGGCGACCAC CACCACCCTC ACCTCGTCGC ACAATCCCAG CGAAGCTGGT CAGCCGGTGA GCTTCACCGC GACGGTGACG GCGAACGGCT CCGTCCCGAC CGGCACCGTT ACCTTTACTG ACGGCGGCGT GGTGATCGGC TCGGTTGGGC TGTCCGGCGG CGCCGCGACG CTCACCACCA GCAGCCTGAC GATTGGATCC CACACCATCG TCGCGGCATT CGCCGCCAAC GCCAGCTTCT CCGCCAGCAC CTCGTCGCCG CTGCTGCAGG CGGTCAACAC GCCGCAGGAC AGCCTGAAGC TGCGCGCCAT GCAGATCATG GCCAGCAAGA CCATCGCCCA GACCTCCGGC GCAGCGATTT CGGGCGCGAT CGATACGGCG ATTTCCGAGG GCTTCAACGA CGGCGGCGAG CTGATCACGC CATCAGGCTC AGGCCTGCGC TTCAACTTCA CTGACGATCT CTCCCAAAGC AGAGCCGGCA CTCCGGAAAG CACGGTCGAA AGCCGCTGGC CGGCTTTCGC CTCGCACGGC AGCGGCGCGC CGGGCCATCA GGCAACCGGG TTCGGCCTTG GCGACCCGCA ATCGTCCGGG CGCGCTCAGG CCCGCTTCGA CGACACGTTC GCGGCGATCG ACCGCAAGCC CGACATCGCC AAAGCACCGG CCAAGGCGCC GGCCGTGCCG AAGGACTGGC TGATGTGGGC CGAGGTCAAG GGAGCAAGCA TCGGCCAATG GAATTCAACC AGTACGGCAT CGGTGCTGTC GGGCAATCAG GTGAATGCGT TGATCGGACT GACGCGAAGG CCGTCCCCGG ACCTGCTGAT CGGTGTTATC GGCGGTTATG AGACGTTCGA CTACAAGTCG GGCACGCTCA ACGGCCGGCT CAAGGGCGAT GGCTGGACGA TCGGCTCCTA CGCGGCCTGG CGATCCGCCG CCGGACTACG CTTCGATATC GCTGGCGCCT ATTCGGGGAT CGGTTACGAC GGCTCGGCCG GCACCGCCTT CGGCAGCTTC GATGGACGGC GCTGGCTGAT GTCCGGCGGC GTCACTGGCT CCACCGAGGC GTTCGGTTTC GCGATCGAGC CTTCCGCCAA GGTGTACGCG CTATGGGAGA GCCAGAATGC CTATGTCGAC TCCCTCGGCA CAACGCAGGC GCAGCGCGAA TTCTTCACTG GCCGGGCCTC GGCCGGGCTC AAGGTAAGCT ATCCCTGGCT CTACAGCGCG ACGCTGACGC TCGCGCCCTA CACCGGAGTC TTTGCCGACT ACTACTTCCT CGGCGACAAC GCGGAGACGA TCACGCTCGC TGGCGGGACG CCGCTGGCGT CGGTGCCTCT GATGGACGGC TGGTCCGCCC GGGTGACCGG GGGCATCGCA GCGCGGTTCG GCAATGGCGC GGCAGTCGCG GTCGGTGGAG AACTCGGTGG GCTGGGCGGC ACAGTGCAGA TCTGGACGCT CCGCGGCCGG GCGTCGGTGC CATTCTAA
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Protein sequence | MKALTESTQR GDPCLDQCRS PAARFSAAVA ALISPLVCRA HLILWLTSAC IVSVLTPTLS WASASCTAVN GSALNYSVSF SSPGNPDDGK GFNEAYLMSF ATGDTIHYSV TISTIAGTID AGFIADYSFG IPTTFNNNLS GAGFHTSTSG SYTLSASDVM KINSNPDGSW TPGLSSQAID HTFSGFLGSV SFSATCTAAG SPTVSSVSPS SGPTAGGTSV TITGTNFGGA TSVSFGSNSV PSSSFTSSSA TQIVVPSPAG SAGTVHVTVT NAIGTSPTSS SDQFTYVAAP TIGSISPSSG PTTGGTSVTI TGTNLSGVTG VTVGGASATL GANTSTSIAI TTPSGTAGAR DVVVTTAGGS VTSTGGFAFI AAPTIGSISP NSGPTGGGTS VTITGTNLSG VTGVTVGGAS ATLGANTSTS IVITTPSGTA GARDVVVTTA GGSVTSTGGF TYIAAPTIGT ISPSSGPTGG GTSVTITGTN LSGVTSVTVG GASATLGSNT STSIVITTPS GTAGARDVIV TTAGGAVTST GGFTYIAAPT IGTISPSSGP TGGGTNVTIT GTNLSGVTGV TVGGASATLG TNTSTSIVIT TPSGTAGARD VIVTTAGGSA TSTGGFTYIA GPTIGTISPN SGPTAGGTSV TITGTNLSGV TSVTIGGAAA TLGSNTSTSI VITTPAGTAG ARDVVLTTAG GSVTSTGGFT YAAAPTISTV TPSSGSTGGG TSVTITGTNL SGVTSVTVGG TAATLGTNTS TSIVITTPTG TAGARDVVLT TAGGSVTSTG GFTYILSPSI STISPNAGPS AGGTSVTISG TNLSGVTSVT IGGAAATLGT NTSTSIVVTT PAGTAGARDV VVTTSGGSVT AVGGFTYAGP PTIGTISPSS GPTGGGTSVT ITGSNLANIT NVTIGGAAAS LGANTSTSIV VTTPSGAVGA RDVVVSTAGG SVTSTGGFTY VAAPTISSIS PSSGLAAGGT SVTITGTNLS GVTSVTVGGA AATLGINTAT SIVITTPAGT AGARDVVVTT AGGPVTSTAG FTYISAATVT AISPAVGPIS GGTSVTITGT NFTGATAVTI GGAAATGVSI VNATTITATT SAHAAGNVDV VVTTPGGTAT GSGLYSYVSG PVVTSISPAS GPSAGGTSVT ITGSNLAGAT AVSFGGAAAT AVSVTSATTI TATTPAHAAG AVDVTVTTPG GSSTGAGLFS YIVAATTTTL TSSHNPSEAG QPVSFTATVT ANGSVPTGTV TFTDGGVVIG SVGLSGGAAT LTTSSLTIGS HTIVAAFAAN ASFSASTSSP LLQAVNTPQD SLKLRAMQIM ASKTIAQTSG AAISGAIDTA ISEGFNDGGE LITPSGSGLR FNFTDDLSQS RAGTPESTVE SRWPAFASHG SGAPGHQATG FGLGDPQSSG RAQARFDDTF AAIDRKPDIA KAPAKAPAVP KDWLMWAEVK GASIGQWNST STASVLSGNQ VNALIGLTRR PSPDLLIGVI GGYETFDYKS GTLNGRLKGD GWTIGSYAAW RSAAGLRFDI AGAYSGIGYD GSAGTAFGSF DGRRWLMSGG VTGSTEAFGF AIEPSAKVYA LWESQNAYVD SLGTTQAQRE FFTGRASAGL KVSYPWLYSA TLTLAPYTGV FADYYFLGDN AETITLAGGT PLASVPLMDG WSARVTGGIA ARFGNGAAVA VGGELGGLGG TVQIWTLRGR ASVPF
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