| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3002 |
|---|
| Symbol | |
|---|
| ID | 4023505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3342670 |
|---|
| End bp | 3343302 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637963201 |
|---|
| Product | phage tail Collar |
|---|
| Protein accession | YP_570129 |
|---|
| Protein GI | 91977470 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4675] Microcystin-dependent protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.592982 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACG CATATATTGG TCAGATTATG CAGGTCAGTT TCAATTTCGC GCCCATCGAT
TGGGCGGTCG CCGCCGGGCA GACTCTCAAC GTTACGCAGA ACCAGGCCTT GTTCGCGTTG
ATCGGGGCGA CCTTCGGCGG TGACGGGCGG ACCACGTTTC AGCTTCCCAA TTTGCAGTCG
CGGGTGATCA TCGGTGCGGG GCAGGGTCCG GGTCTCAGCA ACTATGCGTG GGGCGCCCAT
GCCGGTGTCG AGCGTGTCGC GCTCACCCAG GCGAACCTGC CTGCGCATTC ACATGCCGCA
GCATTCACGC CGACCGGCGG TGGTACCGGC GGACCGACGG CGGTGCAGGC CCTGACTGGT
GTTGCTGTTA CCTCTCTGTC GGCATCCCCG GCTGCTGGAT CGCAATTGGC GAATACCGGG
CCGGCCGGGG GAGGTCAGCC GAAAATCTAT GCGCCGGCGG GTACGTCCGG CACGCCGGTG
AATCTGGGCG GCGTGAGTGG AGGCGGCGGA ATTACCGGCG GTACGGTTCA GATCGGCAAT
ACGGGCAATA ATATCCCGGT CGAAACCTTG CCGCCCTATC TGGCGCTGCG AACCAACATC
TGCATGTCGG GTCTCTATCC AGTCCAGGAT TGA
|
|---|
| Protein sequence | MADAYIGQIM QVSFNFAPID WAVAAGQTLN VTQNQALFAL IGATFGGDGR TTFQLPNLQS
RVIIGAGQGP GLSNYAWGAH AGVERVALTQ ANLPAHSHAA AFTPTGGGTG GPTAVQALTG
VAVTSLSASP AAGSQLANTG PAGGGQPKIY APAGTSGTPV NLGGVSGGGG ITGGTVQIGN
TGNNIPVETL PPYLALRTNI CMSGLYPVQD
|
|---|
| |