| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2997 |
|---|
| Symbol | |
|---|
| ID | 4023500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3337713 |
|---|
| End bp | 3339257 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637963196 |
|---|
| Product | amidophosphoribosyltransferase |
|---|
| Protein accession | YP_570124 |
|---|
| Protein GI | 91977465 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0034] Glutamine phosphoribosylpyrophosphate amidotransferase |
|---|
| TIGRFAM ID | [TIGR01134] amidophosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.807987 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.439972 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCGA TGCAGAGCCA TTCCGACGAC GCCGCAACGC CCGCTTCGGA CGCTCGCGAC
CCGCAAGGTC TGGATAACCA TATTCTCGAT AGCGACATGT TCGACACTGA CGGTGACACG
CTGCGCGAAG AATGCGGCGT ATTCGGCATT TTCGGCCACC CGGATGCGGC TGCGATCACC
GCGCTCGGGC TGCACGCCTT GCAGCACCGC GGCCAGGAAG CCGCCGGCAT CGTTTCGTTC
GACAACGGCC GCTTCCACTC CGAGCGTCGG CTCGGCCTCG TCGGCGACAC CTTCTCCCGC
GCCGACGTGA TCGCGCGGCT GCCGGGCAAC CTTGCGGTCG GCCATGTTCG CTATTCGACC
ACCGGCGAGA CCATTCTGCG CAACGTGCAG CCGCTGTTCG CCGAGCTCAA TGCCGGCGGC
TTCGCGATCG GCCACAACGG CAACCTCACA AACGGGCTGA CGCTGCGCCG CGAATTGGTG
CAGAGCGGCG CGATCATGCA GTCGACCACC GATACCGAGG TGATTCTGCA TCTGGTGGCG
AACTCCAAGC GCAGCCGCTT CATCGACCGT TTCATCGAGG CGTTGCGCGC GCTCGAAGGC
GCCTATTCGC TGGTGTCGCT CACCAACAAG AAGCTGATCG GCGCTCGCGA CCCGCTGGGC
ATCCGCCCGC TGGTGCTGGG CGAACTCGAC GGCTGCCCGA TCCTGGCGTC GGAGACCTGC
GCGCTCGACA TCATCGGTGC GAAGTACGTC CGCGACGTCG AGCCCGGCGA AGTCATCGTG
TTCGATAGAC ACGGCGTCAC CAGCCACAAA CCGTTTCCGC CGATGCCGCC GCGGCCCTGC
ATCTTCGAAT ACATCTACTT CGCACGACCG GATTCGATCG TCGGCGGCCG ATCGGTCTAT
GACGTCCGCA AAGGGTTCGG CGCCGAACTC GCCCGCGAAA GCCACATCGC GGCTGATGTC
GTGGTTCCAG TGCCGGATTC CGGCGTCCCG GCGGCGATCG GCTACAGCCG CGAAAGCGGC
GTGCCGTTCG AACTCGGCAT TATCCGCAAT CACTATGTCG GGCGAACCTT CATCCAGCCG
ACTCAGAGCA TTCGCGAACT CGGCGTGCGG ATGAAGCACT CCGCCAATCG CGCGGCGATC
GAAGGCAAGC GGATCGTGCT GATCGACGAC AGCCTCGTGC GCGGCACCAC GTCGAAGAAG
ATCGTCAAGA TGATGCGCGA CGCCGGCGCC AAGGAAGTCC ACTTCCGCAT CGCATCGCCG
CCGATCACGC ACCCCGATTA CTACGGCATC GACACGCCCG ACCGCGCCGG CCTGCTGGCG
GCGACGCATA CGCTCGAAGA GATGCGCGAA CTGATCGGCG CGGACTCGCT GGCGTTCCTG
TCGGTCGACG GCATCTACCG GGCGATGGGC GAGCCGGCCC GCGATCCGGC GCATCCGACC
TTCACCGATC ATTGTTTCAC CGGCGAATAC CCGACTCCGC TGACGGATAT GAATCAGACG
GAATCGTCGC CGCGGCAATT ATCGCTACTG GCGGAAGCAA GCTGA
|
|---|
| Protein sequence | MDAMQSHSDD AATPASDARD PQGLDNHILD SDMFDTDGDT LREECGVFGI FGHPDAAAIT
ALGLHALQHR GQEAAGIVSF DNGRFHSERR LGLVGDTFSR ADVIARLPGN LAVGHVRYST
TGETILRNVQ PLFAELNAGG FAIGHNGNLT NGLTLRRELV QSGAIMQSTT DTEVILHLVA
NSKRSRFIDR FIEALRALEG AYSLVSLTNK KLIGARDPLG IRPLVLGELD GCPILASETC
ALDIIGAKYV RDVEPGEVIV FDRHGVTSHK PFPPMPPRPC IFEYIYFARP DSIVGGRSVY
DVRKGFGAEL ARESHIAADV VVPVPDSGVP AAIGYSRESG VPFELGIIRN HYVGRTFIQP
TQSIRELGVR MKHSANRAAI EGKRIVLIDD SLVRGTTSKK IVKMMRDAGA KEVHFRIASP
PITHPDYYGI DTPDRAGLLA ATHTLEEMRE LIGADSLAFL SVDGIYRAMG EPARDPAHPT
FTDHCFTGEY PTPLTDMNQT ESSPRQLSLL AEAS
|
|---|
| |