Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2984 |
Symbol | |
ID | 4023487 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 3324546 |
End bp | 3325997 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637963183 |
Product | GGDEF domain-containing protein |
Protein accession | YP_570111 |
Protein GI | 91977452 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.301535 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCTGC GAAGCCCCCG CATTTCCTAC CGGGAAACCG CAACGGCCTC GCAAACGCTG TATTTTCAGC ATCCCGGCAG TGAATTGTTT ACTCTGTCTG TATGCCAAGC AGCGTCCGAG CGCATCTATC AACAGCTGTT CGACGAAAGC CCAATGACAT CAAGTGGCCC TTTGCATTTG ATGCGCCGCG TGAATACAGC AGCCCCCGAT CGTCCCGAAC CTTTGAGTGC CGAGCGTCGC GGCGCGCCGA GCCGCGTGGT CGCGTGGCTG ATCAACGGCC CGCGCCCACA GCCCCGCTCG ATCACCCATC GTTTGTTGCT GCATGGTCTG ACCCGGAAAC GCACGCTGGT GCTGGCGATC CTGTCGACGA CGCTGCTGAC GATCGTTGCG GCTGCAATGA CCGGCGCGGC GTGGGCCTAT GCCTGGGTGT TGATCGAGTT GGCGTTCGGC GTCGCGCGCT ACGGCGCTCT CGACAGGCTC CAGAAGGCGC GCGTCTCCGG CCAAGCCGGC GACGCCATGC TGCCGCTCTA TGTGGGACTG TGCTGGGGCA TCAGTTACTC CGTCGGCTGC GCGTTGTGCG TCCTGTCGGG CGAATGGCCG CTGATCATGC TGGCCGGCAT GGTGATCGCC GGCGTCGCCG GCGGCATCGC CTCACGTAAC GCCGGTACGC CGCGCTACGG GATCGCGCTG ATCTACATTC TCGGACTTCC CTACACCTGC GCCATGATGG TCTCGCCGAT TCCGCACATG TACGTGGTCG GTCTGCTGGT GCCGGTCTGG GGGCTGGGAA TGGCGCTCAT CCTGATGGAG AACTACGAAA TCCTGCTCAA TCTGTTTCTG AAGGAGCGTG AGAACCAGTG GCTGGCGAAT TACGATTCCC TGACCGGCCT GCCCAACCGG ACCATGCAGC GCCAACGCTT CGAGCAGTTG CTGCGCGGCG CGACCGGCAC GACAGGCCGA GGCTATCAGC CGCTGACGGT GTTCTGCCTC GACCTCGACG GCTTCAAGGC GGCCAATGAT CGCTACGGTC ACGCGCTCGG TGACGCAGTG CTCGTGACCG TCGCCGAACG GTTGCGCAGT TGCGTGCGCG AGCACGACCT GATCTTCCGG GTCGGCGGCG ACGAGTTCGT GATCCTGCTC CCGGCCACCG GAGCCACGGA GAGCGCTGCG ATCGCCGAAC GCGTCATCGC GCGGATCGCC GAGCCGTTCG ACCTCGGCAG GACGATCGCT CTCACGATCG GCGTCAGCAT CGGCAGCGCC ACCTTCCCCC GCGACGGCCT GACCGCCGAC GCCTTGTTAC GCTCCGCCGA CCACGCGATG TACGAGGCCA AGCGGCGGGG AAAAGGCACC CTCGTGCACT GCGATACGAT CGACGACCCG ACCGACCTGG TTCCCGAATT CGACGCCGAC GCCCGCGTGG CAAGGACCGT CTGGATCCGA TCGGAGGCCT GA
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Protein sequence | MRLRSPRISY RETATASQTL YFQHPGSELF TLSVCQAASE RIYQQLFDES PMTSSGPLHL MRRVNTAAPD RPEPLSAERR GAPSRVVAWL INGPRPQPRS ITHRLLLHGL TRKRTLVLAI LSTTLLTIVA AAMTGAAWAY AWVLIELAFG VARYGALDRL QKARVSGQAG DAMLPLYVGL CWGISYSVGC ALCVLSGEWP LIMLAGMVIA GVAGGIASRN AGTPRYGIAL IYILGLPYTC AMMVSPIPHM YVVGLLVPVW GLGMALILME NYEILLNLFL KERENQWLAN YDSLTGLPNR TMQRQRFEQL LRGATGTTGR GYQPLTVFCL DLDGFKAAND RYGHALGDAV LVTVAERLRS CVREHDLIFR VGGDEFVILL PATGATESAA IAERVIARIA EPFDLGRTIA LTIGVSIGSA TFPRDGLTAD ALLRSADHAM YEAKRRGKGT LVHCDTIDDP TDLVPEFDAD ARVARTVWIR SEA
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