| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2984 |
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| Symbol | |
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| ID | 4023487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3324546 |
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| End bp | 3325997 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637963183 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_570111 |
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| Protein GI | 91977452 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.301535 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCTGC GAAGCCCCCG CATTTCCTAC CGGGAAACCG CAACGGCCTC GCAAACGCTG
TATTTTCAGC ATCCCGGCAG TGAATTGTTT ACTCTGTCTG TATGCCAAGC AGCGTCCGAG
CGCATCTATC AACAGCTGTT CGACGAAAGC CCAATGACAT CAAGTGGCCC TTTGCATTTG
ATGCGCCGCG TGAATACAGC AGCCCCCGAT CGTCCCGAAC CTTTGAGTGC CGAGCGTCGC
GGCGCGCCGA GCCGCGTGGT CGCGTGGCTG ATCAACGGCC CGCGCCCACA GCCCCGCTCG
ATCACCCATC GTTTGTTGCT GCATGGTCTG ACCCGGAAAC GCACGCTGGT GCTGGCGATC
CTGTCGACGA CGCTGCTGAC GATCGTTGCG GCTGCAATGA CCGGCGCGGC GTGGGCCTAT
GCCTGGGTGT TGATCGAGTT GGCGTTCGGC GTCGCGCGCT ACGGCGCTCT CGACAGGCTC
CAGAAGGCGC GCGTCTCCGG CCAAGCCGGC GACGCCATGC TGCCGCTCTA TGTGGGACTG
TGCTGGGGCA TCAGTTACTC CGTCGGCTGC GCGTTGTGCG TCCTGTCGGG CGAATGGCCG
CTGATCATGC TGGCCGGCAT GGTGATCGCC GGCGTCGCCG GCGGCATCGC CTCACGTAAC
GCCGGTACGC CGCGCTACGG GATCGCGCTG ATCTACATTC TCGGACTTCC CTACACCTGC
GCCATGATGG TCTCGCCGAT TCCGCACATG TACGTGGTCG GTCTGCTGGT GCCGGTCTGG
GGGCTGGGAA TGGCGCTCAT CCTGATGGAG AACTACGAAA TCCTGCTCAA TCTGTTTCTG
AAGGAGCGTG AGAACCAGTG GCTGGCGAAT TACGATTCCC TGACCGGCCT GCCCAACCGG
ACCATGCAGC GCCAACGCTT CGAGCAGTTG CTGCGCGGCG CGACCGGCAC GACAGGCCGA
GGCTATCAGC CGCTGACGGT GTTCTGCCTC GACCTCGACG GCTTCAAGGC GGCCAATGAT
CGCTACGGTC ACGCGCTCGG TGACGCAGTG CTCGTGACCG TCGCCGAACG GTTGCGCAGT
TGCGTGCGCG AGCACGACCT GATCTTCCGG GTCGGCGGCG ACGAGTTCGT GATCCTGCTC
CCGGCCACCG GAGCCACGGA GAGCGCTGCG ATCGCCGAAC GCGTCATCGC GCGGATCGCC
GAGCCGTTCG ACCTCGGCAG GACGATCGCT CTCACGATCG GCGTCAGCAT CGGCAGCGCC
ACCTTCCCCC GCGACGGCCT GACCGCCGAC GCCTTGTTAC GCTCCGCCGA CCACGCGATG
TACGAGGCCA AGCGGCGGGG AAAAGGCACC CTCGTGCACT GCGATACGAT CGACGACCCG
ACCGACCTGG TTCCCGAATT CGACGCCGAC GCCCGCGTGG CAAGGACCGT CTGGATCCGA
TCGGAGGCCT GA
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| Protein sequence | MRLRSPRISY RETATASQTL YFQHPGSELF TLSVCQAASE RIYQQLFDES PMTSSGPLHL
MRRVNTAAPD RPEPLSAERR GAPSRVVAWL INGPRPQPRS ITHRLLLHGL TRKRTLVLAI
LSTTLLTIVA AAMTGAAWAY AWVLIELAFG VARYGALDRL QKARVSGQAG DAMLPLYVGL
CWGISYSVGC ALCVLSGEWP LIMLAGMVIA GVAGGIASRN AGTPRYGIAL IYILGLPYTC
AMMVSPIPHM YVVGLLVPVW GLGMALILME NYEILLNLFL KERENQWLAN YDSLTGLPNR
TMQRQRFEQL LRGATGTTGR GYQPLTVFCL DLDGFKAAND RYGHALGDAV LVTVAERLRS
CVREHDLIFR VGGDEFVILL PATGATESAA IAERVIARIA EPFDLGRTIA LTIGVSIGSA
TFPRDGLTAD ALLRSADHAM YEAKRRGKGT LVHCDTIDDP TDLVPEFDAD ARVARTVWIR
SEA
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