| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2894 |
|---|
| Symbol | |
|---|
| ID | 4023394 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3223798 |
|---|
| End bp | 3224442 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637963094 |
|---|
| Product | endopeptidase Clp |
|---|
| Protein accession | YP_570023 |
|---|
| Protein GI | 91977364 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.421191 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.311555 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGATC CGGTGGAAAC CTATATGAAC CTCGTGCCGA TGGTGGTCGA GCAGACCAAC
CGCGGCGAGC GAGCCTACGA CATCTTCTCG CGCCTCCTGA AAGAGCGGAT CATCTTCCTG
ACCGGACCGG TCGAGGACGG CATGTCGACG CTGGTGGTCG CCCAGCTGCT GTTCCTGGAA
GCCGAGAATC CGAAGAAGGA AATCTCGATG TACATCAACT CGCCGGGCGG CGTGGTGACA
TCGGGTCTAG CGATCTACGA CACCATGCAG TTCATCCGCC CGCCGGTCTC GACGCTGTGC
ACCGGCCAGG CCGCTTCGAT GGGCTCGCTG CTGCTCGCCG CCGGCCACAA GGACATGCGG
TTCTCGCTGC CGAACGCGCG GATCATGGTG CATCAGCCGT CCGGCGGGTT CCAGGGCCAG
GCCACCGACA TCATGCTGCA CGCCCAGGAG ATCCTGAACC TGAAGAAGCG GCTGAACGAG
ATTTACGTTC ACCACACCGG CCAGACCTAC AAGGCGATCG AGGACGCGCT GGAGCGCGAC
AAGTTCCTCA CCGCCGAGAT GGCGCGCGAA TTCGGCATCG TCGACAAGGT GATCGACAAG
CGCGCCGAAG AGACGGCCTC GGCCTCGGGT CCGAAGGCGC CCTGA
|
|---|
| Protein sequence | MRDPVETYMN LVPMVVEQTN RGERAYDIFS RLLKERIIFL TGPVEDGMST LVVAQLLFLE
AENPKKEISM YINSPGGVVT SGLAIYDTMQ FIRPPVSTLC TGQAASMGSL LLAAGHKDMR
FSLPNARIMV HQPSGGFQGQ ATDIMLHAQE ILNLKKRLNE IYVHHTGQTY KAIEDALERD
KFLTAEMARE FGIVDKVIDK RAEETASASG PKAP
|
|---|
| |