| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2890 |
|---|
| Symbol | |
|---|
| ID | 4023389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3217294 |
|---|
| End bp | 3218586 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637963089 |
|---|
| Product | peptidase T |
|---|
| Protein accession | YP_570019 |
|---|
| Protein GI | 91977360 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2195] Di- and tripeptidases |
|---|
| TIGRFAM ID | [TIGR01882] peptidase T |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.223061 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGTCTG GCGGTCCTGC AGTGAACTCT TCACCGATCC GCTCCAGCCA AATCGATTTC
AGCCACGGCG TCATTGAGCG CTTTCTGCGC TATGTCGCGA TCGACACCCA GTCCGATCCC
GCCTCTTCGA CCTGCCCCTC GACCGCGAAG CAGAAGACCC TCGGCGCCTT GCTGGCGCAG
GAGCTGCGCG ATCTCGGGCT TTCGGACGCC CATCTCGACG AGCACGGCTA CGTCTACGCC
ACGATCCCGG CGACCACTGA CAAAAACGTC CCGGTGATCT GCTTCTGCGC GCATATGGAC
ACCTCACCCG ATTGTTCAGG CGAAGGCGTC AAGCCTCAGA TCGTGAAGAA CTATCAGGGT
GGCGACATCG TCCTGCCGGC GGACCCGACG CAGGTCATCC GCGCGACCGA GCATCCAGCG
CTGGCGCAGC AGATCGGCCA TGACATCGTC ACGACCGATG GCGTCACCTT GCTCGGGGCG
GACAACAAGG CCGGAATCGC GGAGATCATG GACGCCGCGG CATTCCTGAT CGCCAATCCG
CAGATCAGGC ATGGCACGCT CAAAGTCCTG TTCACGCCCG ACGAGGAGAT CGGCCGCGGC
GTCGACAAGG TCGACCTCGC CAAACTCGGC GCTGATTTCG CCTACACCAT GGACGGCGAG
ACCGCGGGCA ATATCGAGGA CGAAACCTTC TCCGCCGATT CGGCCGTCGT CACCATCACC
GGCGTGAGCG CCCATCCGGG CTTCGCCAAG GGCAAGATGG AGCACGCCAT CAAGATCGCT
GCGGCGATCG TGGAACGGCT TCCCAGGGAC GCCTGCTCGC CGGAAACCAC CGAGGGCCGC
GAGGGCTTCC TGCATCCGGT CGGCATCACC GGCGCGCTGG AGCAGACCAC GCTGAGTTTC
ATCGTCCGCG ACTTCACCCA GGCCGGACTG CAGCAGAAGG AAGCGCTGTT GCAGGGAATC
GTCGACGAGG TGATGCGCGA CTATCCGCGC TCGACCGCGA CGATCGAGAT CAAGCAGCAG
TATCGCAACA TGAAGCAGGT GCTCGACCGC CATCCCGAGC TGGTCGAGAA CGCCCGCGAG
GCGATTCGGC GCGCCGGCCT GACGCCGGTC ACCACCGCGA TTCGCGGCGG CACCGACGGA
TCGCGGCTGT CGTTCATGGG GCTGCCCTGC CCCAACATCT TCGCCGGCGA ACACGCCTTC
CATTCAAGGC TCGAATGGGT CAGCCGCCAG GATATGGAGG CCGCCGTTCG CACCATCGTG
CATCTGGCGA TGATCTTCGA GGAGCAGGCG TAA
|
|---|
| Protein sequence | MRSGGPAVNS SPIRSSQIDF SHGVIERFLR YVAIDTQSDP ASSTCPSTAK QKTLGALLAQ
ELRDLGLSDA HLDEHGYVYA TIPATTDKNV PVICFCAHMD TSPDCSGEGV KPQIVKNYQG
GDIVLPADPT QVIRATEHPA LAQQIGHDIV TTDGVTLLGA DNKAGIAEIM DAAAFLIANP
QIRHGTLKVL FTPDEEIGRG VDKVDLAKLG ADFAYTMDGE TAGNIEDETF SADSAVVTIT
GVSAHPGFAK GKMEHAIKIA AAIVERLPRD ACSPETTEGR EGFLHPVGIT GALEQTTLSF
IVRDFTQAGL QQKEALLQGI VDEVMRDYPR STATIEIKQQ YRNMKQVLDR HPELVENARE
AIRRAGLTPV TTAIRGGTDG SRLSFMGLPC PNIFAGEHAF HSRLEWVSRQ DMEAAVRTIV
HLAMIFEEQA
|
|---|
| |