| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2858 |
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| Symbol | dnaE |
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| ID | 4023356 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3184743 |
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| End bp | 3188198 |
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| Gene Length | 3456 bp |
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| Protein Length | 1151 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963056 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_569987 |
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| Protein GI | 91977328 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.813555 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.262906 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACG CCGGATTCGT CCATCTGCAC GTTCACTCGG CCTATTCGCT GCTGAAGGGC
TCGATGAAGA TCGCGCGGCT GGCGGAACTC GCCAAAGCCG ACCACCAGCC GGCGCTGGCG
TTGACCGACA CCGACAACAT GTTCGGCGCG CTGGAATTCT CCGACAAGCT CGCCGGCAGC
GGCATCCAGC CGATAGTCGG CCTCGAACTC GGGATCGATT TCGGCGACCA GGACCCGAAC
TCGCGCAACA CCGCGGTGGC GGCGCCGTCG CGGATCGTGC TGCTGGCGAC GCGCGAGCGC
GGCTATCGCA GCCTGATGCG GCTGAATTCG CGGGCGTTCC TCGAAACCCC GGTGAACCAG
CCGCCGCACA TCAAATTCGA CTGGCTCGAC GGCGAGACCG AGGACGTGAT CGCGTTGACC
GGCGGCCCGG ATGGCCCGAT CTCGCTGGCG ATGCTGACCG ATCCGGCGCT GGGACGGCTG
CGCTGCGAGC GGCTGGCGCA GGCGTTCGGC GACCGGCTCT ATGTCGAGCT GCAGCGCCAC
AACACCGATT TCGAGCGCCG CGCTGAAGCA GGGCTGATCG ACGTCGCTTA CGATATGGGG
CTGCCGCTGG TCGCCACCAA CGAGCCGCAT TTTGCGACCT CCGATGATTT CGAGGCGCAC
GACGCGCTGC TGTGCATCGC CTCCGGCAAG TTGATCGCCG AGACCGATCG CGTCCAGCTC
ACGCCCGACC ACCGCTTCAA GACCCGCGCC GAAATGGCGG TGCTGTTTGC TGATCTGCCG
GAGGCGCTGG CCTCCACCGT CGAGATCGCG CAACGCTGCG CCTATCGGCC GCTGACCCGC
AAGCCGATCC TGCCGCTGTT CACCGTCGGC GCCAGCGTCA ACGACGCCGA GGAGGCGGCG
GCTGCGGAAG CCGCCGAACT GCGTCGCCAG GCCGAGCAGG GGCTCGCCGA CCGGATGCGC
ATCCACGGCC TGTCGCAGGG CATGTCCGAG GAGGACTATC GCAAGCGGCT CGCCTTCGAG
CTCGATGTCA TCACCCGGAT GAAATATGCC GGTTACTTCC TGATCGTGTC CGACTTCATC
AAATGGGCCA AGGCGCATGG CATTCCGGTC GGCCCGGGCC GTGGCTCCGG CGCCGGCTCG
CTGGTGGCGT ATTCGCTGAC CATTACCGAT CTCGATCCGA TCCGCTTCGG CCTGCTGTTC
GAGCGCTTCC TCAATCCCGA ACGCGTCTCG ATGCCGGACT TCGACATCGA CTTCTGCCAG
GACCGCCGCG GCGAAGTGAT CGAATATGTG CAGCAGCGCT ACGGCCGCGA TCAGGTCGCC
CAGATCATCA CTTTCGGTAC GCTGCAGGCG CGCGGCGTGC TGCGCGACGT CGGCCGCGTT
CTGCAGATGC CGTACGGGCA GGTCGACAAG CTGACCAAGC TGGTGCCGCA GAATCCCGCC
GCGCCGGTGT CGCTGAAGCA GGCGATCGAA AGCGAGCCGA AGCTGCAGGC CTTTCGCGAC
GAAGACCCGG TGGTGGCGCG CGCCTTCGAC ATCGCGCAGA AGCTCGAGGG CCTGACCCGC
CACGCCTCGA CCCACGCCGC CGGCATCGTG ATCGGCGATC GGCCGCTCAG CGATCTGGTG
CCGATGTATC GCGATCCCAA ATCCGATATG CCGGTGACCC AGTTCAACAT GAAATGGGTC
GAGCCGGCGG GTCTGGTGAA GTTCGACTTC CTCGGCCTCA AGACGCTCAC CGTGCTCGAT
GTCGCGGTGA AGCTGCTCAA GCAGCGCAAT ATCCATATCG ATCTGGCGAC GCTCGGGATC
GAGGACGCTC CGAGCTATCA GATGTTGGCG CGCGGCGATG TGGTCGGCGT GTTTCAGGTT
GAAAGTCAGG GCATGCGCCG CGCGCTGGTC GACATGCGCC CCGACCGCTT CGAGGACATC
ATTGCGCTGG TCGCGCTGTA TCGCCCGGGT CCGATGGCGA ACATCCCGAC CTATTGCGCG
CGCAAGCACG GCGACGAGGA GCCGGAATAT CTGCATCCGA TGCTGGAGCC GATTCTCAAG
GAGACGTTCG GCGTCATCAT CTACCAGGAA CAGGTGATGC AGATCGCGCA GGTGATGGCC
GGCTACTCGC TCGGCGAAGC CGACCTGCTG CGCCGCGCGA TGGGCAAGAA GATCCGCGCC
GAGATGGAGA AGCAGCGCGC GATCTTCGTC GAGGGCGCCA CCAGGAACGG CGTGCCCAAG
GACGCCGCCG ACACGATCTT CGATCTGCTG GCGAAGTTCG CCGACTACGG CTTCAACAAG
AGTCACGCGG CCGCCTACGC GCTGGTGTCG TATCACACCG CCTATATGAA GGCGCATTAT
CCGGTCGAGT TCATCGCGGC GTCGATGACG CTCGATCTCA ACAACACCGA CAAGCTGTCG
GAATTCCGCG CCGAGGCGCA GCGACTCGGC ATCAAGGTCG AAGCGCCCTC GGTCAATCGG
TCCGGCCCGA CCTTCGAGGT CGGCGAGAAT ACGATCTACT ACGCGCTCGC TGGCCTGAAG
GGCGTCGGCC AGCACGCGGT TCAGATGATC GTCGAGGCGC GGGGCGACAA GCCGTTCAGC
TCGCTCGCGG ACTTCGCCGC CCGGGTCAAT CCGCGGGCGA TCAACAAGCG GGTGATCGAA
AGCCTCGCGG CCGCCGGCGC GTTCGACTGC CTCGATCCCA ACCGCGCGCG GGTGTTCGCC
GGCGCCGACG CGATCATCGC CGCCTGCCAG CGCAGCCACG AGGCCGCCAC CAGCGGCCAG
AACGACATGT TCGGCGGACT TGCGGATGCG CCATCGATCG TGCTGCCGCA GGTCGAGCCG
TGGCTTCCGG CGGAGCGGCT GCGGCGCGAA TACGACGCCA TCGGCTTCTT CCTGTCCGGT
CACCCGCTCG ACGACTACGC CACCGCGCTG AAGCGGCTGC GGGTGCAATC CTGGTCGGAT
TTCTGCAAGG CGGTGAAGTC GGGCGCGACG GCGGGGAAGG TTGCGGCCAC GGTGGTGTCG
CGGATGGAGC GCCGCACCAA GACCGGCAAC AAGATGGGGA TCATGGGCCT GTCCGACCCG
ACCGGCCATT TCGAGGCGGT GCTGTTCTCC GAGGGGCTCG CGCAGTATCG GGAAGTGCTG
GAGCCGGGCG CCGCGGTGCT GCTGCAGCTC GGCGCCGAGC TGCAGGGCGA GGACGTTCGC
GCCCGCGTGC TGCACGCCGA GCCGCTCGAC GCTGCTGCCG CCAAGACCCA GAAAGGGCTG
CGGATTTTCC TGCGGGACAC CAAACCGCTG GATTCGATCT CGAAACGGCT GCAGCCGCCG
GAGACCAAGG TCGCGGGAGG CAATATCGCC CTGGTGCTGC GGCTCGACCC GCAGACCGAG
GTCGAATTCG AGATTCCCGG CCGGTTTCAG GTGTCGCCCC AGATCGCCGG GGCGATCAAG
GCGGTGATCG GGGTCGAGCA CGTCGAGACG CTCTGA
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| Protein sequence | MSNAGFVHLH VHSAYSLLKG SMKIARLAEL AKADHQPALA LTDTDNMFGA LEFSDKLAGS
GIQPIVGLEL GIDFGDQDPN SRNTAVAAPS RIVLLATRER GYRSLMRLNS RAFLETPVNQ
PPHIKFDWLD GETEDVIALT GGPDGPISLA MLTDPALGRL RCERLAQAFG DRLYVELQRH
NTDFERRAEA GLIDVAYDMG LPLVATNEPH FATSDDFEAH DALLCIASGK LIAETDRVQL
TPDHRFKTRA EMAVLFADLP EALASTVEIA QRCAYRPLTR KPILPLFTVG ASVNDAEEAA
AAEAAELRRQ AEQGLADRMR IHGLSQGMSE EDYRKRLAFE LDVITRMKYA GYFLIVSDFI
KWAKAHGIPV GPGRGSGAGS LVAYSLTITD LDPIRFGLLF ERFLNPERVS MPDFDIDFCQ
DRRGEVIEYV QQRYGRDQVA QIITFGTLQA RGVLRDVGRV LQMPYGQVDK LTKLVPQNPA
APVSLKQAIE SEPKLQAFRD EDPVVARAFD IAQKLEGLTR HASTHAAGIV IGDRPLSDLV
PMYRDPKSDM PVTQFNMKWV EPAGLVKFDF LGLKTLTVLD VAVKLLKQRN IHIDLATLGI
EDAPSYQMLA RGDVVGVFQV ESQGMRRALV DMRPDRFEDI IALVALYRPG PMANIPTYCA
RKHGDEEPEY LHPMLEPILK ETFGVIIYQE QVMQIAQVMA GYSLGEADLL RRAMGKKIRA
EMEKQRAIFV EGATRNGVPK DAADTIFDLL AKFADYGFNK SHAAAYALVS YHTAYMKAHY
PVEFIAASMT LDLNNTDKLS EFRAEAQRLG IKVEAPSVNR SGPTFEVGEN TIYYALAGLK
GVGQHAVQMI VEARGDKPFS SLADFAARVN PRAINKRVIE SLAAAGAFDC LDPNRARVFA
GADAIIAACQ RSHEAATSGQ NDMFGGLADA PSIVLPQVEP WLPAERLRRE YDAIGFFLSG
HPLDDYATAL KRLRVQSWSD FCKAVKSGAT AGKVAATVVS RMERRTKTGN KMGIMGLSDP
TGHFEAVLFS EGLAQYREVL EPGAAVLLQL GAELQGEDVR ARVLHAEPLD AAAAKTQKGL
RIFLRDTKPL DSISKRLQPP ETKVAGGNIA LVLRLDPQTE VEFEIPGRFQ VSPQIAGAIK
AVIGVEHVET L
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