| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2803 |
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| Symbol | |
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| ID | 4023301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3123481 |
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| End bp | 3124611 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637963001 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_569932 |
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| Protein GI | 91977273 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.602838 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.227029 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAATAC GTCGCTGGAT CATCATTGCG ATCGTGCTGG GCGCCGCCGC CGTCGCCTTC
GTCGCGCTTC GACCGTACTT CTCCGAAAAG CAGATCGCGA CCAAGGGTGC GCAGCGGCCG
CGCGTGGTGG CGGTCGACAT GGTCAAGGCG GTGCGCAAAC CGGTCCCGGT CGATGTCGAC
GCGATCGGCA CGGTGACGCC GATCTCCAGT GTGGCGCTGA AATCACGGCT CGAAACCACG
ATCCTCGCTG TGCATTTCGA GGACGGCGCG CGGGTCAAGG AAGGCGACCT GCTGTTCACG
CTCGACGCAC GGCAGATCGA CGCCCAGATC GAGCAGGCCG AGGGCAATCT CGCCCGCGAT
CGCGCCCAAC TCGCCGGCGC TGAACGCGAT CTGCGCCGCT ACGGCGAGCT GATCGCCAAG
GGTGCCACCA CCCAGGTCAA TCTCGACAAC GCCAAAACCC AGGCCGACAT CCTGGCCGGC
ACAATCAAGG GGGCGCAATC GGCGCTGGAC AATCTCAAGG TCCAGAAGAG CTTCACGATG
ATCCGCGCGC CGTTCTCCGG CCGTATCAGC GCGGCCAACG TCAAGATTGG AAACTTCGTT
CGCCCCGCCG ACACCGCGTC GCTGGCAACC ATCAACCAGA TGGCGCCGGT CTACGTCACC
TTCGCGGTAC CTCAGCGCGT GCTGGTCGAT CTGCGCGACG CGATGAAGGC GGAATCCACC
AAGGTTGTCG CCACCATTCC GGGCAGCGGC CGGTCGGAGG TCGGCAAAAT GGCGATGGTC
GAGAACACCG TCGACGCCAC CACCGGCATG GTCACGGTCC GCGGCATCAT GGACAATGGC
AACGAGACGC TTTGGCCCGG CACGCTGGTC AATACCAAGC TGACGATCCG GACCGAGGAC
GCCGTCGCCG TTCCGACCGT CGCGGTGCAA CGCAGCCAGA CCGGCAACTT CGTGTTCGTG
GTCAAGGATG GCGCCGCGCA TGTTCAGCCG GTCACCGTCA GCCGCACCTT CGAGGGTGAA
ACCGTGATCG CCCAAGGCCT CGCCGGCGGC GAGGACATCG TGACCGACGG CCAACTGCTG
CTGTCGGAGG GCACCAAGGT CGAATCCCGC AGCCGCAAGG CCGGAGCCTG A
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| Protein sequence | MRIRRWIIIA IVLGAAAVAF VALRPYFSEK QIATKGAQRP RVVAVDMVKA VRKPVPVDVD
AIGTVTPISS VALKSRLETT ILAVHFEDGA RVKEGDLLFT LDARQIDAQI EQAEGNLARD
RAQLAGAERD LRRYGELIAK GATTQVNLDN AKTQADILAG TIKGAQSALD NLKVQKSFTM
IRAPFSGRIS AANVKIGNFV RPADTASLAT INQMAPVYVT FAVPQRVLVD LRDAMKAEST
KVVATIPGSG RSEVGKMAMV ENTVDATTGM VTVRGIMDNG NETLWPGTLV NTKLTIRTED
AVAVPTVAVQ RSQTGNFVFV VKDGAAHVQP VTVSRTFEGE TVIAQGLAGG EDIVTDGQLL
LSEGTKVESR SRKAGA
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