Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2777 |
Symbol | secD |
ID | 4023275 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 3094251 |
End bp | 3095852 |
Gene Length | 1602 bp |
Protein Length | 533 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637962975 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_569906 |
Protein GI | 91977247 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.626907 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.768312 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGTATT TCACTCGGTG GAAGGCGCTG GCGGTCATTC TGACGGCGCT GGCGGTGTGC CTTTGCGCCG TTCCGAATTT CTTCCCGGAG AGCACCGTCA AGACCTGGCC GAAATGGGCG CAGCGCCATC TGGTGCTGGG CCTCGATCTG CAGGGCGGCT CGCACATCCT GCTCGAGGTC GACGCCAATT CGGTCAAGAA GGACAAGCTC GAATCGGTGC GCGACGATGC GCGCCGGGTG TTGCGTGAAG CGCGGATCGC CTACACCGGC CTCGCGCAGA AGGGCGACGT CGTCGAGGTC AAGATCAGCA AGGACACCGA GGTTCCCGCA GCGCTCACCA AGCTGCGCGA ACTGTCGCAA CCGCTCGGCG GATTGCTCGG CTCCAACGGG CAGCGCAGCC TCGAGGTCTC CGACGCCGGC GGCGGCGTGA TCCGGCTGGC CGTGCCGCCG GCGGCGATCG CCGACCGCAT CCGCCAGTCG GTCGATCAGT CGATCCAGAT CGTCGAACGC CGCGTCAACG AACTCGGCAC CGTCGAACCG CTGATCCAGC GCCAGGGCGC CGACCGCATT CTGGTCCAGG TGCCGGGCCT GCAGGACCCG ACCCGGTTGA AGGAGCTGCT CGGCAAGACC GCCAAGCTCG ACTTCCGCAT GGTGGATTCC TCGGTGTCGG CGGATCAGGC CCAGCAGGGA CGGGCGCCGC CGGATTCCGA CGTGCTGATG AGCGCGCAGA CGCCGAAGCA GCCTTATGTG ATCAAGAAGC AGATTCTGGT GTCCGGCGGT GATCTCACCG ACGCCCAGCC CGGCTTCGAT TCGCGCACCA GCGAGCCGAT CGTCAGCTTC CGCTTCAACA CCAGCGGCGC GCGCAAATTC TCCCGCGCCA CCACCGAGAA TGTCGGCCAG CCGTTCGCGA TCGTGCTCGA CAACGAGGTG ATTTCGGCGC CGGTGATCCG CGAGCCGATC ACCGGCGGCT CCGGCCAGAT TTCGGGCAGC TTCACAGTGC AGCAGGCCAA CGACCTCGCG ATTCTGCTGC GCGCCGGCGC ATTGCCGGCG CCGCTGACGA TCATCGAGGA GCGCACCGTC GGTCCCGGCC TCGGCCAGGA TTCGATCGAG AAGGGCGAAC TCGCCGCCTA TGTCGGTTCG ATTCTCGTCA TCATCTTCAT GCTGCTGACC TACCGGCTGT TCGGCGTGTT CGCGAACCTC GCTGTCGCGG TCAACGTGGC GATGATCTTC GGTGTGCTGT CGCTGCTCAA TGCGACGCTG ACGCTGCCGG GAATCGCCGG CGTCGTGCTC ACCGTCGGCA TCGCGGTCGA TTCCAACGTG CTGATCTACG AGCGCATCCG CGAAGAGCTT CGTGCCGGCC GCAACGCGAT CTCCGCGATC GACGCCGGCT TCAAGCGGGC GCTGTCGACG ATTCTCGATT CCAACATCAC CACCTTCATC GCCGCCGCGG TGCTGTTCTA CATCGGCACG GGCCCGGTGC GCGGCTTCGC GGTGACGCTC GGTATCGGCA TCATCACCAC CGTGTTCACC GCCTTCACCG TGACCCGGCT GATCGTCGCC ACCTGGGTGC GGTGGAAGCG GCCGCAGACC GTGCCGATCT GA
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Protein sequence | MLYFTRWKAL AVILTALAVC LCAVPNFFPE STVKTWPKWA QRHLVLGLDL QGGSHILLEV DANSVKKDKL ESVRDDARRV LREARIAYTG LAQKGDVVEV KISKDTEVPA ALTKLRELSQ PLGGLLGSNG QRSLEVSDAG GGVIRLAVPP AAIADRIRQS VDQSIQIVER RVNELGTVEP LIQRQGADRI LVQVPGLQDP TRLKELLGKT AKLDFRMVDS SVSADQAQQG RAPPDSDVLM SAQTPKQPYV IKKQILVSGG DLTDAQPGFD SRTSEPIVSF RFNTSGARKF SRATTENVGQ PFAIVLDNEV ISAPVIREPI TGGSGQISGS FTVQQANDLA ILLRAGALPA PLTIIEERTV GPGLGQDSIE KGELAAYVGS ILVIIFMLLT YRLFGVFANL AVAVNVAMIF GVLSLLNATL TLPGIAGVVL TVGIAVDSNV LIYERIREEL RAGRNAISAI DAGFKRALST ILDSNITTFI AAAVLFYIGT GPVRGFAVTL GIGIITTVFT AFTVTRLIVA TWVRWKRPQT VPI
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