Gene RPD_2733 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_2733 
Symbol 
ID4023231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3052493 
End bp3053233 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content68% 
IMG OID637962932 
Productlytic transglycosylase, catalytic 
Protein accessionYP_569863 
Protein GI91977204 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.187494 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAAGT TTTTCGCGCC CAGGATGATC CTTGCCGTGG CGACCGCCGC CGCAGCACTG 
ATCGTCGCGA ACGGCGCCGG GCAGGCTCAG GAAAGGCTGT CCGACGCAGC CGCCTTGCTG
GTGGTCTCGA CGCGGCCGGC CGCGCCTTCG GCCTTCGACG CGGTCAGCGT GTCGGCGCCG
TGGGCGGCCA CCATCGAACA GGCCGCGGGC GAAAACGGCC TGCCGCCGGT CTTCCTGCGC
AGGCTGCTCC ATCAGGAAAG CACGATGTTC AATCTGGCGG TGAGCCGCGC CGGCGCGATG
GGTATTGCCC AGTTCATGCC GCGCACCGCT GCAGCGCGCG GCCTCGACGA CCCGTTCGAT
CCGCAAAAGG CAATCCCCGC CGCCGCGCGC TATCTCAGCG ATCTGCGCCG TCAGTTCGGC
AATCTTGGCC TCGCAGCCGC GGCTTACAAT GCAGGATCGG GGCGGGTCAG CGCGTGGCTG
AGCGGCACGT CGGAATTGCC CGCCGAGACG CGGGCCTACG TGATGCGCAT TACCGGCTTC
AGCGCCGAGG ATTGGGCTGC GAACAAGCCG GATGCTGCCG CGCTGCGGGC CGCGCCGCCA
TCAGCGGCGA TCCCGCAGCT CCACGCGCTG AAGGCCGAAG CGGGACCAAA ACCGTCACCA
AAGAAGAAGA CTACGGAAGC CGAACTCTGC GCCGCCGTGA GCACCGCAGC GCGCGCTTGC
ATCCTTCAGA CCGTCTACTG A
 
Protein sequence
MAKFFAPRMI LAVATAAAAL IVANGAGQAQ ERLSDAAALL VVSTRPAAPS AFDAVSVSAP 
WAATIEQAAG ENGLPPVFLR RLLHQESTMF NLAVSRAGAM GIAQFMPRTA AARGLDDPFD
PQKAIPAAAR YLSDLRRQFG NLGLAAAAYN AGSGRVSAWL SGTSELPAET RAYVMRITGF
SAEDWAANKP DAAALRAAPP SAAIPQLHAL KAEAGPKPSP KKKTTEAELC AAVSTAARAC
ILQTVY