| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2721 |
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| Symbol | |
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| ID | 4023219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3037511 |
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| End bp | 3039394 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637962920 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_569851 |
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| Protein GI | 91977192 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.250068 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCACG CCGAAATCCC GCAACTGGCG GCTGGCGACC CGCTCACGAT TCCAACGCGC
AAGTCGCTGA CGAGCACGTT GGAATCCACG CTCGGTCTGC TGGTCGAGAT CCCCGCGGCC
ATGCTGGTGG TCGCGGAGAT CGTCGTGCTA TTTGCCGGCG TGGTGTCGCG CTACGTGTTT
CACAGTCCGT TGATCTGGTC GGACGAACTG GCCTCGATCC TGTTCCTGTG GCTGGCGATG
TTCGGCGCGG CGGTGGCGTT CCGCCGCGGC GAGCACATGC GGATGACCGC GCTGGTGGCC
AGCGCTTCGC CCCGGATGCG TGCGTTTCTC GATCTCGTTG CGATCTGCGC GGCGCTGGCA
TTCCTGCTGC TGATCGCAGC GCCCGCAGCC GAATACGCCT ATGAGGAAAG CTACATCACC
ACCCCGGCGC TTTCGCTCTC CAACATCTGG CGCGCCGCCG CGCTGCCGGT TGGCACCGCG
CTGATGGCGA TGTTCGCGCT GCTGCGACTG GTGCGGTTCG GCGATTGGCG GCTGGTGGTG
GGCGCCGCCC TCACCGTCGC GGTGCTGATC GGCCTGTTCT GGCTGGCGCA GCCGTTGCTG
AAGCCGCTTG GCAACATCAA CCTGCTGATC TTCTTCGTCG GCGTCGCCGG CCTGTGCGTG
TTCGCCGGCG TGCCGATCGC GTTCGGGTTC GGGCTGTCGA TCTACGGCTA TCTGGCGCTG
ACGACGCGGA CGCCCCTGAT GGTGCTGGTC GGCCGGATGG ACGAAGGCAT GAGCCACCTG
ATCCTGCTGT CGGTGCCGCT GTTCGTGTTC CTCGGTCTGC TGATCGAGAT GACCGGGATG
GCGCGGGCGA TGGTGGCGTT TCTCGCCAGC CTGCTCGGTC ATGTCCGCGG CGGTCTGCAT
TATGTGCTGG TCGGCGCGAT GTATCTGGTC TCCGGCATTT CCGGCTCCAA GGCCGCCGAT
ATGGCGGCGG TGGCGCCGGT GCTGTTTCCA GAGATGAAGG AACGCGGCGC CAAGCCAGGC
GATCTGGTCG CCCTGCTCGC CGCGACCGGC GCCCAAACCG AGACCATTCC GCCGAGCCTG
GTGCTCATCA CCATCGGCTC GGTGACCGGC GTGTCGATCT CGGCGCTGTT CACCGGTGGC
TTGTTGCCCG GCGTGGTGCT GGCGATCACG CTGTCGATGC TGGTCTGGTG GCGCTATCGC
GGCGAGGACC TCAGCCACAT CAGGCGCGCC TCGGCGAGCC AGATCGGCAG AACGCTGATC
ATTGCCCTGC CCGCGCTGGC GCTGCCGTTC GTGATCCGCG CCGCCGTGGT CGAAGGTGTC
GCCACCGCGA CCGAAGTGTC GACGATCGGC ATTGTCTACG CCGTGCTCGC CGGGCTTCTG
ATCTATCGGA AATTCGACTG GCGGCGGCTG ATGCCGATGC TGATCGACAC CGCGGCGCTG
TCCGGCGCGA TCCTGCTGAT CATCGGCACC GCCACCGCCA TGGCTTGGGG GCTGACACAA
TCCGGCTTCT CGCGGGCGCT CGCCACCGCG ATGACCGGCC TGCCCGGCGG CCCGGCGGCC
TTCCTCGCAG TGTCGATCGT CGCCTTCATC ATTCTCGGCA GCGTGCTCGA AGGTATTCCG
GCGATCGTGC TGTTCGGGCC TCTGTTGTTT CCGATCGCGC GTGCGGTCGG CATCCACGAG
GTGCACTACG CCATGGTGGT TATTCTGGCG ATGGGCATCG GATTGTTCGC GCCGCCGTTC
GGGGTCGGCT ATTATGCCGC CTGTGCGATC GGCCGGGTCG ATCCGGCCGA GGGCGTGCGT
CCGATCTGGG GATACATGCT GGCGTTGCTG GTCGGCTTGA TCATCGTCGC AGCGTTCCCA
TGGATTTCGA TCGGATTTTT GTAA
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| Protein sequence | MAHAEIPQLA AGDPLTIPTR KSLTSTLEST LGLLVEIPAA MLVVAEIVVL FAGVVSRYVF
HSPLIWSDEL ASILFLWLAM FGAAVAFRRG EHMRMTALVA SASPRMRAFL DLVAICAALA
FLLLIAAPAA EYAYEESYIT TPALSLSNIW RAAALPVGTA LMAMFALLRL VRFGDWRLVV
GAALTVAVLI GLFWLAQPLL KPLGNINLLI FFVGVAGLCV FAGVPIAFGF GLSIYGYLAL
TTRTPLMVLV GRMDEGMSHL ILLSVPLFVF LGLLIEMTGM ARAMVAFLAS LLGHVRGGLH
YVLVGAMYLV SGISGSKAAD MAAVAPVLFP EMKERGAKPG DLVALLAATG AQTETIPPSL
VLITIGSVTG VSISALFTGG LLPGVVLAIT LSMLVWWRYR GEDLSHIRRA SASQIGRTLI
IALPALALPF VIRAAVVEGV ATATEVSTIG IVYAVLAGLL IYRKFDWRRL MPMLIDTAAL
SGAILLIIGT ATAMAWGLTQ SGFSRALATA MTGLPGGPAA FLAVSIVAFI ILGSVLEGIP
AIVLFGPLLF PIARAVGIHE VHYAMVVILA MGIGLFAPPF GVGYYAACAI GRVDPAEGVR
PIWGYMLALL VGLIIVAAFP WISIGFL
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