| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2681 |
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| Symbol | |
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| ID | 4023178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2995391 |
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| End bp | 2998540 |
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| Gene Length | 3150 bp |
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| Protein Length | 1049 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637962879 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_569811 |
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| Protein GI | 91977152 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0839162 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.444783 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCGCT TTTTCATTGC CCGTCCGATC TTCGCCTGGG TCGTTGCGAT CTTCATCTGC
CTCGCCGGCG TGCTGGCGCT GCCGTTCCTC CCGGTCGCGC AGTATCCGAT CATCGCTCCG
CCATCGATTT CGATCGCGAC GGTCTACCCC GGCGCCTCGA CCCAGAACTT GTATTACGGC
GTCACCCGCC TGATCGAAGA GGAGCTCAAC GGCGCTGCCG GCATCCTCAG CTACGAGTCG
ACCAGTGACA CCACCGGCGA GGTCGAGATC ATCGCCTCGT TCCAGCCCGG AACGGACATC
TCGAAGGCGT CGGTCGACGT CCAGAACCGC ATCAAGCGGA TCGAGCCTCG GCTACCGGAG
CCGGTGCGCC AGGAGGGCAT CGCCATCACC GAGGCGAGCA GCGCCATCCT GCAATTCGTG
ACGCTGACCT CGAGCGACAA CAGTCTCGAC GAGATCGGCC TCGGCGACGT CGCCACCCGC
TATGTGCTGC CGGAGCTTCG GCGTTTAGCT GGCGTCGGCC GCGTCCGGCT GTTCTCGACC
GAGCGGGCGA TGCGCATCTG GCTCGATCCC GACAAGCTGC TCGGCCTCGG CCTGACCGCC
CAGGACGTCG ACGCCGCGAT CGAGGCGCAG AATGCCCCGG TCGCCTCCGG CCAGCTCGGG
GTGCAACCAA CGCCGACCCG GCAGCGCCTG CAGAACATGG TGCTGGTGAA AGGCCAGCTG
GATTCCCTCG ACGAGTTCGG CGACATCGTG CTGCGCGCCA ATCCGAACGG CTCGACCGTG
CGCCTCGCCG ACGTCGCGCG GCTCGAGGTC GGCGGCCTGT CCTATTCGTT CTCGACCCGT
CTCGACGGCC GCCCGGCCGC CGCTGTGGCC GTTCAGCTCG CTCCCTCCGG CAACGCCCTC
GCGACTTCGG CAGCCGTGAA GGCCCGGATG ACGGAATTGG CTGCGTTTTT TCCGCCCGGC
GTGAAGTACG AAGTGTCCTA CGACGTCACC CCGGTGATCG CCGCATCGGT CAAGAAAGTG
CTGCTGACTC TCGGCGAGGC GGTGGTGCTG GTGTTCCTGG TGATGTTCCT GTTTCTGCAG
AACATCCGCT ACACCATGAT CCCCACCATC GTGGTGCCAA TTGCGCTGCT CGGAACCTGT
GCGGTGCTGT TCGCACTGGG CTTCTCGATC AACGTGCTCA CCATGTTCGG AATGGTGTTG
GCGATCGGCA TTCTGGTCGA CGACGCCATC GTGGTGGTCG AGAATGTCGA ACGCATCATG
TCCGAAGAAG GACTGTCGCC ACGCGCCGCG ACCGAGAAGG CGATGGAGCA GATCACCGGC
GCAGTGATCG GCATCACGCT GGTGCTGATG GCGGTGTTCG TTCCGATGGC GTTTTTCCCG
GGCTCTGTCG GCATCATGTA CAAGCAGTTC TCGGCGTCCA TGGTGGTGTC GATCGGCTTC
TCGGCGTTCC TGGCGTTGTC GCTCACGCCG GCGCTGTGCG CGACCCTGCT GAAGCCAGTT
GAAAAGGGCC ATGGCCACGC TACGCGCGGG TTCTTCGGTT GGTTCAATGG CCGGCTCGAT
CGGGCGACCC GCAGTTACGG CCGTGCGACC CGCTGGATGG TGGCGCGGGG TGGGCGCTTC
ATGCTGGTCT ATCTGGCGCT GCTCGTCGGA GTCGGCTTTG CGCTGTGGCG TCTGCCCGGC
GGCTTCGTGC CGATCGACGA TCAGGGATTC GTGATGGTCG ACGTGCTCGC TCCACCCGAC
GCCAGCGCGA ACCGCACGGC CGATGTGGTG CAAAGCGTCG AAAAGACCCT CGCGGCCACG
CCCGGCATCG ACAAGATCAC CTTCATCACC GGCTTCAGCT TCTTCGGCCA GGGCGCGAAC
ACGGCGCAAG CCTTCGTCAC GTTGAAGGAC TGGTCGGAGC GCGGGCGAAA CGAAACCGCC
GACGCGCTGA TCGCCCGCGT CAATCCGGAA TTCGCCAAGA TCCGGGACGC CGATGTGTCG
ATGCTGGCGC CGCCGCCGAT CGACAATCTC GGCACCACCA GCGGCTTCAG CTTCCGCCTT
CAGGACCGTT CGCAGCGCGG CTACGAAGCG CTGATGGGCG CCAAGGACGC ATTGCTCGCG
GCGGCAGCCC GCTCGCCGGT GCTGACCAAC GTCGCGGTGG AAGGGTTGCC GCCCGCTCCA
CAGGTCCGTC TCGATATCGA CCGGCGAAAA GCCGCGGCGC TCGGCGTCAC TTTCGCCGCC
ATCAACTCGA CGCTCTCGAC CAATCTCGGA TCGAGCTACA TCAACGACTT CCTCAATCTC
GGCCGGATGC AGCGTGTGAT CGTGCAGGCC AATGACGACA AGCGCGTCAA GCCTGAGGAT
CTGTTGAGCT ACAGCGTCAA GAACAGTACC GGCGAGATGG TGCCGTTCTC GTCATTCGCC
CGCGTCGCCT GGGTGGTCGG GCCCACTCAG GTTGTCGGCT TCGACGGCTA TCCGTCGGTG
CGTCTCACCG GCAATCCGGC GCCCGGCTAC AGTTCGGGCG ACGCCATCGC CGAGATGGAG
CGGCTGATGC GGGCGTTACC CGGCGGCTTC GGCTACACCT GGACCGGGCA GTCGTTGCAG
GAGAAGCTCG CCGGCTCGCA GGCGGCCTTC CTGCTCGGAC TGTCGATCCT GTTCGTGTTC
CTGTGCCTGG CGGCGTTGTA CGAAAGCTGG TCGATCCCCT TCGCGGTGAT GCTTGCGGTG
CCGCTCGGCG TGGTCGGATC GGTCGCCGCG GCGATGCTGC GCGGCTTGCC CAACGACGTC
TATTTCACGG TCGGAATCGT CACCATCATC GGCCTGTCCG CAAAGAACGC GATCCTGATC
ATCGAATTCG CCAAGGAGTT GCGCGCCAAC GGAACCCCGC TGGTGGAAGC GACCATCACC
GCAGCCGAAC TACGTTTCCG GCCGATCATC ATGACCTCGC TCGCCTTCAT TCTCGGCGTG
GTGCCACTGG TGATCGCCAG CGGAGCCAGC GGCGCGAGTC AGCAGGCGCT CGGCACCGGC
GTGCTCGGCG GCATGATCAC CGCGACCGTG CTCGCGGTGT TCTGGGTCCC GGTGTTCTTC
GTCGTGGTGA TGCGGTTTTT CACGCGGCAG CAGGACGCGC AGGCCCCGAG CGCGGACGCG
TTGCCGACAT CGCCGAGCCA ATCGTCGTGA
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| Protein sequence | MSRFFIARPI FAWVVAIFIC LAGVLALPFL PVAQYPIIAP PSISIATVYP GASTQNLYYG
VTRLIEEELN GAAGILSYES TSDTTGEVEI IASFQPGTDI SKASVDVQNR IKRIEPRLPE
PVRQEGIAIT EASSAILQFV TLTSSDNSLD EIGLGDVATR YVLPELRRLA GVGRVRLFST
ERAMRIWLDP DKLLGLGLTA QDVDAAIEAQ NAPVASGQLG VQPTPTRQRL QNMVLVKGQL
DSLDEFGDIV LRANPNGSTV RLADVARLEV GGLSYSFSTR LDGRPAAAVA VQLAPSGNAL
ATSAAVKARM TELAAFFPPG VKYEVSYDVT PVIAASVKKV LLTLGEAVVL VFLVMFLFLQ
NIRYTMIPTI VVPIALLGTC AVLFALGFSI NVLTMFGMVL AIGILVDDAI VVVENVERIM
SEEGLSPRAA TEKAMEQITG AVIGITLVLM AVFVPMAFFP GSVGIMYKQF SASMVVSIGF
SAFLALSLTP ALCATLLKPV EKGHGHATRG FFGWFNGRLD RATRSYGRAT RWMVARGGRF
MLVYLALLVG VGFALWRLPG GFVPIDDQGF VMVDVLAPPD ASANRTADVV QSVEKTLAAT
PGIDKITFIT GFSFFGQGAN TAQAFVTLKD WSERGRNETA DALIARVNPE FAKIRDADVS
MLAPPPIDNL GTTSGFSFRL QDRSQRGYEA LMGAKDALLA AAARSPVLTN VAVEGLPPAP
QVRLDIDRRK AAALGVTFAA INSTLSTNLG SSYINDFLNL GRMQRVIVQA NDDKRVKPED
LLSYSVKNST GEMVPFSSFA RVAWVVGPTQ VVGFDGYPSV RLTGNPAPGY SSGDAIAEME
RLMRALPGGF GYTWTGQSLQ EKLAGSQAAF LLGLSILFVF LCLAALYESW SIPFAVMLAV
PLGVVGSVAA AMLRGLPNDV YFTVGIVTII GLSAKNAILI IEFAKELRAN GTPLVEATIT
AAELRFRPII MTSLAFILGV VPLVIASGAS GASQQALGTG VLGGMITATV LAVFWVPVFF
VVVMRFFTRQ QDAQAPSADA LPTSPSQSS
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