| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2680 |
|---|
| Symbol | |
|---|
| ID | 4023177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2994179 |
|---|
| End bp | 2995360 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637962878 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_569810 |
|---|
| Protein GI | 91977151 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.957988 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.305533 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAG ATCATTCGCG TCGTTCGACC GGTTTAATCG CTTGCGCGAT CGCCGTGATG
TCGCTGACGT CCTGCACCGA CCAGGGCGCT GCGCCCACCG CGACTGCAGC GGCTCTCCCC
GAGGTCGGCG TCGTCACGGT CGAGGCGAGA CCGGTGACAC TCACCAAGGA GCTGCCCGGG
CGCATCACGC CGATGCGAAT CGCAGAGGTC AGGCCCCGCA TCACCGGCAT CGTGACCGAA
CGCGCCTTTC AGCAGGGCAG CCTGGTCGAG GCCGGGACAG TGCTGTACCG GATCGATCCC
GCGCCATTCC AGGTTGAACT CGACAAGGCC CGCGCGGCGC TCGCGAAGGC GGAAGCGGTG
CTGTATCAGG CGTCCCGCCA GGAAGACCGT CTGAAGAACC TTCTGACCGG GCAGGCCACG
ACCCAGGCGC AGTACGAACT CGCGGTCGCC TCCGAGCGCC AGGCCGAGGC CGAGGTGTCG
GCCCAGAAGG CCGCGGTCGA CCAGGCGCAG CTCAACCTCA ATCTGGCGAC GGTGAGGGCG
CCGATCAGAG GCCGCATCGG ACGGGCGCTG GTCACCGAAG GCGCGCTGGT CAACCCCAAC
GAGACGTCGC AGCTGGCGAC CATTCAACAG CTCGATCCGA TCTATGCCGA CTTCACGCAA
TCGGTCGGCG AGCTCAGCCA ACTCAAGCAC GATCTCGCCG AAGGCCGTCT GAAAAAAGTG
TCTTCGGAAG CGGCGCGGGT CCGCTTGGTG CTCGACGACG GCACGCCCTA CGATCACGTC
GGCCGGCTGC TGTTCTCGGA CGTCAGCGTC GATCCCGGCA CGGCCAGGGT GACGCTGCGC
GGCGAATTCC CCAATCCCCA GGCCGATCTG CTGCCGGGCA TGTATGTGCG GGTGCAGATC
GAGGAGGGGA TCGACATCGA CGGCATCGTG GTCCCGGCCC AGGCGGTTCA GCGGACAACG
GCTGGCTCCG CCGCAATTTT CGTCGTCAAC GATGTCGGGC GAGCGATGCT GCAGCCGGTG
CGGGCGGGCC GGACGCTCGC AAACGGAATC CTGATCGAGG AGGGGCTGAA GCCGGGCTGG
CGGATCGTCG TCGACGGCTT TCAGAAGTTC TCGCCGGGCG CCGCGGTCAA GCCGGTGCCG
TGGGAGAGCG CCGGCGCGGA TGCGCGGAGC AAGCCGAACT GA
|
|---|
| Protein sequence | MLKDHSRRST GLIACAIAVM SLTSCTDQGA APTATAAALP EVGVVTVEAR PVTLTKELPG
RITPMRIAEV RPRITGIVTE RAFQQGSLVE AGTVLYRIDP APFQVELDKA RAALAKAEAV
LYQASRQEDR LKNLLTGQAT TQAQYELAVA SERQAEAEVS AQKAAVDQAQ LNLNLATVRA
PIRGRIGRAL VTEGALVNPN ETSQLATIQQ LDPIYADFTQ SVGELSQLKH DLAEGRLKKV
SSEAARVRLV LDDGTPYDHV GRLLFSDVSV DPGTARVTLR GEFPNPQADL LPGMYVRVQI
EEGIDIDGIV VPAQAVQRTT AGSAAIFVVN DVGRAMLQPV RAGRTLANGI LIEEGLKPGW
RIVVDGFQKF SPGAAVKPVP WESAGADARS KPN
|
|---|
| |