| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2677 |
|---|
| Symbol | |
|---|
| ID | 4023174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2989514 |
|---|
| End bp | 2990485 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637962875 |
|---|
| Product | thiamine-monophosphate kinase |
|---|
| Protein accession | YP_569807 |
|---|
| Protein GI | 91977148 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0611] Thiamine monophosphate kinase |
|---|
| TIGRFAM ID | [TIGR01379] thiamine-monophosphate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00408376 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTCCG GTGAAGACGA TCTGATCGCC CGATACTTCA AGCCGCTCGC AACTGCGCCC
GGCGCGCTGG GGCTGATCGA TGACGCCGCC GTGCTGTCGG CGTCGGGGGA CGATCTGGTG
CTCACCACCG ACGCCATCGT CGAGGGCGTG CATTATCTGT CCGGCGATCC GCCAGACGCG
ATCGCCCGCA AGGCGCTGCG GGTCAACCTG TCCGACCTTG CGGCCAAGGG CGCGGAACCG
GCGGGCTTTC TGCTGACGCT GGCGCTGCGC AAAGTCGACG AGGACTTCCT CGCGCCGTTT
GCCCGCGCGC TCGGCGAAGA TGCCGAGAGT TTCGGCTGCC CGCTCCTCGG CGGCGACACG
GTCTCGACGC CCGGACCGGT GATGATCTCG ATCACCGCCT TCGGCCGGGT GTCGCCGGGG
CGCATGGTGC GACGCAACAC GCTGCGCGCC GGTCACCGCA TCGTCGTCAG CGGCACGATC
GGCGACGCCG CGCTCGGCCT CGACCTGCTG CAAGGCGCTG CCGCCAACAT CTCCGAAGAT
CATCGCGCCT TCCTGGTCGG ACGCTACCGC GTGCCGCAGC CGCGGCTGCA ACTGGCGCAG
GCGGTGCGCG ACCATGCCGG CGCGGCGATG GACGTCTCCG ACGGGCTGGC GGGCGACCTC
GCCAAGATGT GCGCGGCCTC CGGCGTCACC GCCACGATCG ACGCGAGCGC GGTGCCGGTG
TCGGCGGCGG GGCGGGCGAT GCTCGCGCGC GATCCAGCGA AGCTGGCGCG CATCCTGGGC
GGCGGCGATG ACTATGAGGT GCTATGCGGC GTCGATCCCG CGCAACTCGA TCAGTTCCTT
GCTGCAGCGC AACGTGCCGG TGTGCCGGCG ACGGTGATCG GTACGGCCGA GGCCGGAACC
GCAGCGCCCC GCTGGTTCGA CGCCGACCGT CGGGAAGTCT CGCTCACCGC CCTCTCATTC
AGTCACTTCT AG
|
|---|
| Protein sequence | MPSGEDDLIA RYFKPLATAP GALGLIDDAA VLSASGDDLV LTTDAIVEGV HYLSGDPPDA
IARKALRVNL SDLAAKGAEP AGFLLTLALR KVDEDFLAPF ARALGEDAES FGCPLLGGDT
VSTPGPVMIS ITAFGRVSPG RMVRRNTLRA GHRIVVSGTI GDAALGLDLL QGAAANISED
HRAFLVGRYR VPQPRLQLAQ AVRDHAGAAM DVSDGLAGDL AKMCAASGVT ATIDASAVPV
SAAGRAMLAR DPAKLARILG GGDDYEVLCG VDPAQLDQFL AAAQRAGVPA TVIGTAEAGT
AAPRWFDADR REVSLTALSF SHF
|
|---|
| |