| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2673 |
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| Symbol | |
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| ID | 4023170 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2986398 |
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| End bp | 2987588 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637962871 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_569803 |
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| Protein GI | 91977144 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.097455 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTTCC GGATCCTCGA AGACCAATAT GCCGAACGCG CCAGGGTCGA AAAGGCCGGG
AAGGCGGCAG CCGCTGCGGC CGATCTGCGC TTCATGCAAC TTGCGCTGAC GCTCGGCCGC
CGCGGGCTCG GCCGCACCGC GACCAACCCG GCGGTCGGCG CGGTGATCGT GAAGGACGGC
GTCATCCTCG GCCGCGGCTG GACAGAGGTC GGCGGCCGGC CCCATGCCGA GGTCGAGGCG
CTGGCGCGCG CCGGCGAGGC CGCGCGCGGG GCGACGCTGT ACGTCACGCT GGAGCCATGC
TCGCATGTCG GCCGATCGCC GCCCTGCGCT GACGCCGTGA TCGCGGCGGG AATCTCCCGC
GTGGTGTCGG CGATCGAAGA TCCCAATCCG CTGGTGGCGG GCCAGGGCCA CGACAAGCTC
CGCGCCGCCG GGATCGCGGT CGATGTCGGC CTCTGCGCCG CGGAGGCCGC GCGCGATCAC
GCCGGGCATT TTCGCCGCGT GCGCGACCGG CGGCCGCATG TCGTGCTCAA GCTCGCGGTG
TCCACCGACG ACAAGATCGC GCGCGCCGGC CACAAGCCGG TGGCGATCAC CGGCGAGGAG
ACCCGGGCGC GGGTGCACCT GCTGCGCGCG CAGTCCGACG CGATCCTGGT CGGGATCGGC
ACCGTGCTGG CCGACGATCC GGAATTGACG GTGCGGCTCC CCGGGATGGC GAAGCAGTCG
CCGATCCGCG TGGTGCTCGA TCCCAGCTTG CGGATTCCCG GCGGCAGCAA GCTGGTGCAT
TCGGCGCGGC AGACGCCGCT GTGGCTGATC GCCTCCGAGG TCGCGGAAGC GGCGGCCGCA
ACGCGCCTCG GCGCGGCCGG GGCGCATGTG ATCCACGTCG CCGATCGGCC GAGCGTTACA
GACGGACAGA GCCGGCCCGG ACTCGATCTC GCCGCGGTGC TGGCAACGCT GTCCGAGAAG
GGCGTCACGC GACTCCTGGT CGAAGGCGGC GCGCGGGTCG CGAGCGCCCT GGTCTCGGAA
AACCTCGCCG ACGAAATCTG GCTGCTGCGC GGCGAGACCA CGATCGGCGC CGACGGCGTC
GATGCACTGG ACCGGCTGCC GCTGACGACT ATCACCCAAT CGTCCGGCTG GCGGGTGCGC
GACAGCGAGC GCCTCGGACC CGACACCCTC ACGATTTACG ATCCCACCTG A
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| Protein sequence | MIFRILEDQY AERARVEKAG KAAAAAADLR FMQLALTLGR RGLGRTATNP AVGAVIVKDG
VILGRGWTEV GGRPHAEVEA LARAGEAARG ATLYVTLEPC SHVGRSPPCA DAVIAAGISR
VVSAIEDPNP LVAGQGHDKL RAAGIAVDVG LCAAEAARDH AGHFRRVRDR RPHVVLKLAV
STDDKIARAG HKPVAITGEE TRARVHLLRA QSDAILVGIG TVLADDPELT VRLPGMAKQS
PIRVVLDPSL RIPGGSKLVH SARQTPLWLI ASEVAEAAAA TRLGAAGAHV IHVADRPSVT
DGQSRPGLDL AAVLATLSEK GVTRLLVEGG ARVASALVSE NLADEIWLLR GETTIGADGV
DALDRLPLTT ITQSSGWRVR DSERLGPDTL TIYDPT
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