| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2625 |
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| Symbol | |
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| ID | 4023122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2943144 |
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| End bp | 2944976 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637962823 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_569755 |
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| Protein GI | 91977096 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.15211 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000486729 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCCCTGC GCGCGGGCGC GCTGGCGGCG GTGATGGTCG TTGGCGTCGT CGCTTTGTTC
AGCGGCGTCG CGCAGGCCGG AGCAGAGGAC GCGGCGAAAC CGTCGCATGC GCTGGCGATG
CACGGCGAGC CTGCTCTGCC TGCCGACTTC ACCGCGATGC CCTATGTCAA CCCCGATGCG
CCGAAAGGCG GTCGTCTGGT GGAAGGTCTG CTCGGCACCT TCGACAGCCT CAATCCGTTC
ATCGTCAGGG GCATCGCGGT GCAGAGGATG CGCGGCTACG TCGTCGAGAG CCTGCTGGCG
CGCGGCAACG ACGAAGCGTT CACGCTTTAC GGCCTGCTGG CGCAATCGGT CGAGACCGAC
GATGCGCGCA GCTACGTCAC CTTTCGCATC GATCCGCGCG CGCGGTTCTC GGACGGCAAG
CCGGTGCTGG CGCAAGACGT GCTGTTCTCC TGGCAATTGC TGCGCGACAA GGGCCGCCCC
AATCATCGCA TTTACTACGC CAAGGTCGCG CGCGCCGAGG CGCCCGATCC GCGCACGGTG
CGGTTCGATT TCGGCGACGT GAACGATCGG GAACTGCCAC TGATCCTCGG CCTGATGCCG
ATCTTTCCCA AACACGCGGT CAACCCCGAC ACCTTCGAGG AGACGACGCT GGCGCCGCCG
ATCGGGTCAG GTCCGTACCG TGTCGGCGCG GTGAAGGCCG GCGCCAGCGT CACGCTGATC
CGGAACCCCG ACTATTGGGG GCGCGATCTT CCGATCAATC GCGGACTATG GAACTTCGAC
GAGATCCGGA TCGATTATTT CCGTGAGGCT AACTCACATT TCGAAGCCTT CAAACGCGAG
CTGTATGACT ACCGCGTCGA AAACGAGCCG CTGCGCTGGC ATGACGGCTA TGACTTTCCG
GCGGCCCGCA ACGGCGACGT GATCCGCGAC GCCTTCAAAA TCCGCATGCC GCAGCCGACC
GAATTTCTGG TGTTCAACAC CCGCCGTCCG GTATTCGCCG ATATCCGGGT CCGCGAAGCG
CTGTTGCAAT TGTTCGATTT CGCATGGATC AACCGCAACT ACTTTTTCGG CCTGTATGCG
CGCGCAGGTG GCTTCTTCGC GGGTTCGGAG CTCTCCGCCT ACACCCGCCC GGCGGAAGCC
GGCGAACTTC AACTGCTGAA GCCCTATCTG GCGCGACTGC GCGCCGACGT CATCGACGGC
AGCTACCGCC TGCCCGTCAG CGACGCCTCC GGCCGCGATC GCGCCACGCT CGGCCGGGCG
CTGTCGCTGC TGGCGGAGGC CGGCTATCAG CTCGACGGCA CGGTGCTGCG GCGGCGCGAC
AATCACCAGC CGCTGACCTT CGAAATCCTG GTCACCACGC GCGATCAGGA GCGCATCGCG
CTGGCCTTCG CCCGCGACGT CAAGCGTGTC GGCATCCAAA CCTCGGTCCG CGTGGTGGAC
GCGGTGCAGT TCGATCAGCG GCGGATCTCT TACGACTTCG ACATGATCCC CAACCGCTGG
GACCATTCGC TGTCGCCGGG CAATGAGCAA TCGTTCTATT GGGGTGCGGA AGCGGCCGAC
ACCCAGGGCA CCCGCAACTA CATGGGCGCG AAGGATCCAG CGATCGACGC CATGATCGCG
GCCATGATCG CGGCGCGCGG GCATCCGGAA TTCGTCGATG CGGTGCGGGC GCTCGATCGC
GTCCTGACCT CGGGCTTCTA CGTGATCCCG CTCTACAACA TCCAGGAACA ATGGATCGCG
CGTTGGAATC GGATAGAACG GCCGAAAGCG AACGCACTGA CCGGCTACCT GCCCGAGACC
TGGTGGGCCC GGCCACCGAC GCAGCAAAGG TGA
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| Protein sequence | MALRAGALAA VMVVGVVALF SGVAQAGAED AAKPSHALAM HGEPALPADF TAMPYVNPDA
PKGGRLVEGL LGTFDSLNPF IVRGIAVQRM RGYVVESLLA RGNDEAFTLY GLLAQSVETD
DARSYVTFRI DPRARFSDGK PVLAQDVLFS WQLLRDKGRP NHRIYYAKVA RAEAPDPRTV
RFDFGDVNDR ELPLILGLMP IFPKHAVNPD TFEETTLAPP IGSGPYRVGA VKAGASVTLI
RNPDYWGRDL PINRGLWNFD EIRIDYFREA NSHFEAFKRE LYDYRVENEP LRWHDGYDFP
AARNGDVIRD AFKIRMPQPT EFLVFNTRRP VFADIRVREA LLQLFDFAWI NRNYFFGLYA
RAGGFFAGSE LSAYTRPAEA GELQLLKPYL ARLRADVIDG SYRLPVSDAS GRDRATLGRA
LSLLAEAGYQ LDGTVLRRRD NHQPLTFEIL VTTRDQERIA LAFARDVKRV GIQTSVRVVD
AVQFDQRRIS YDFDMIPNRW DHSLSPGNEQ SFYWGAEAAD TQGTRNYMGA KDPAIDAMIA
AMIAARGHPE FVDAVRALDR VLTSGFYVIP LYNIQEQWIA RWNRIERPKA NALTGYLPET
WWARPPTQQR
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