| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2603 |
|---|
| Symbol | tgt |
|---|
| ID | 4023099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2917029 |
|---|
| End bp | 2918171 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637962800 |
|---|
| Product | queuine tRNA-ribosyltransferase |
|---|
| Protein accession | YP_569733 |
|---|
| Protein GI | 91977074 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
|---|
| TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.206697 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0104554 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTAC CGAACCATTT CGAACTGCTC GGTCGCGACG GCGCGGCGCG CACCGGTCGG
CTGACTACGC CGCACGGCGT GGTGCGGACA CCGGCCTTCA TGCCGGTCGG CACCGCGGGT
GCGATGAAGG GGCTGCATTG GCGCGAGGTG CGCGACGCTG GCGCCGATAT CGTGCTCGGC
AACACCTATC ATTTGATGCT GCGTCCCGGC GCGGAGCGGA TCGCGGCTCT CGGCGGGCTG
CAGCGCTTCA CCACCTGGAA CGGACCGATG CTGACCGATT CCGGCGGCTT TCAGGTGATG
TCGCTGGCGC AGCTGCGCAA AGTCTCAGAG AAGGCGGTGA ATTTCCGCTC GCATATCGAC
GGCGCCGCGA TCGAATTGTC GCCGGAGCGC GCGATCGAGG TGCAGCTGCT GCTCGGCAGC
GACATCGCAA TGCAACTCGA CGAATGCGTC CGGCTGCCGG CGGAGCGCGC CGACATAGAG
CGCGCGATGC AATTGTCGCT GCGATGGGCC GAGCGCTGCA AGCGCGCGTT CGAGCACGCG
CCGGACGGCC ACATGCTGTT CGGCATCGTG CAGGGCGGCG ACGTGCCGGA ACTGCGCCAC
GCCAGCGCGC ACGGGCTGGT CGAGCTCGGC TTCCACGGCT ACGCGATCGG CGGCCTCGCG
GTCGGCGAGC CGCAGGAGGT GATGCTGGCG ATGATCGAAG AGGCGGCGCC GATCCTGCCT
GCCGACCGGC CGCGCTATCT GATGGGCGTC GGCACGCCGG AAGACATTCT CGAAGCCGTG
GCGCGCGGCA TCGACATGTT CGATTGCGTG ATGCCGACCC GAAACGGACG CCACGGCGTC
GCGTTCACCC GGTTCGGACC GGTGAATCTG CGCAACGCCC GCCACGCTGA CGATCCGCGG
CCACTCGACG AGGACAGCGA CTGGCCCTCG ACCCGCAACT GCTCACGGGC CTATCTGCAT
CATCTGGTGA AATCCGGCGA GACGCTCGGC GCGATGCTGC TGTCGGAAAT CAACATCGCG
TACTATCAGC GGCTCATGCG CGATATGCGT GGCGCAATTG CAGGCGGCTC ATTCGAGACG
TTTCGCGCTC AGACCCGCAC GGGCTGGGCA CAGGGCGACA TCGCACCACG AGGCAACGCG
TAA
|
|---|
| Protein sequence | MSVPNHFELL GRDGAARTGR LTTPHGVVRT PAFMPVGTAG AMKGLHWREV RDAGADIVLG
NTYHLMLRPG AERIAALGGL QRFTTWNGPM LTDSGGFQVM SLAQLRKVSE KAVNFRSHID
GAAIELSPER AIEVQLLLGS DIAMQLDECV RLPAERADIE RAMQLSLRWA ERCKRAFEHA
PDGHMLFGIV QGGDVPELRH ASAHGLVELG FHGYAIGGLA VGEPQEVMLA MIEEAAPILP
ADRPRYLMGV GTPEDILEAV ARGIDMFDCV MPTRNGRHGV AFTRFGPVNL RNARHADDPR
PLDEDSDWPS TRNCSRAYLH HLVKSGETLG AMLLSEINIA YYQRLMRDMR GAIAGGSFET
FRAQTRTGWA QGDIAPRGNA
|
|---|
| |