| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2588 |
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| Symbol | |
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| ID | 4023084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2899977 |
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| End bp | 2901038 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637962785 |
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| Product | dihydrouridine synthase TIM-barrel protein NifR3 |
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| Protein accession | YP_569718 |
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| Protein GI | 91977059 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.225137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00524476 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGGTGGC GACAGAATGA GCAGCTTGTG ATCCACCCAA CAGTAACAGC TTTGCCGGCT
TTGAGGATTG GCAATATTGC GGTGGCCAAT CGGGTGCTGC TGGCGCCGAT GTCCGGCATT
ACCGACGCGC CTTTCCGCAA GCAGGTCGCA GCTCTCGGGG CCGGATTGGT GGTGTCCGAG
ATGACCGCGA GCGAAGACCT TGTCCAGGGG CGCGCAATGT CGGTCCGCCG CTGCGACGCC
ATCGACGGTG CTCCGCACGT TGTCCAGCTC GCCGGCTGCG AACCGCATTG GATGGCGGAA
GGCGCCCGGA TCGCCGAGGC GGGCGGCGCC GACATCATCG ATATCAATAT GGGCTGTCCG
GCCCGGCACG TGACCGGCGG CCAATCCGGT TCGGCGTTGA TGCGTGATCT CGATCACGCA
CTGACGCTGA TCGAGGCCAC GATCGACGCG GTGCGCGTGC CGGTGACGCT GAAGATGCGG
CTCGGCTGGG ATGAGCGCTC GCTCAACGCG CCGGAATTGG CGCGGCGGGC CGAGGCCGCC
GGCGTCCAAT TAGTGACGGT TCACGGCCGC ACCCGCAGTC AGTTCTACAA AGGCGAGGCC
GACTGGCGCG CGGTCCGCGC CGTTCGCGAG GCGATCAGCA TTCCACTGGT CGTCAACGGC
GATATCACGA CGTATCACAT GGCGGTCGAA GCGCTCGACC AGTCCGGCGC CGACGCGGTA
ATGATCGGCC GCGGTGCGCA GGGGCAGCCC TGGCTGCCGG GCCAGATCGG CCGGCGGCTG
CAGACCGGGA TCGCCGAGGC GATGCCGTCG CTCGCCGAAC AGTTCGACTA TCTCCGCAGC
CTCTATGACG GCGTGCTGAG TTTGTACGGA CAACGCATTG GGCTGCGCCA CGCTCGCAAG
CATCTCGGCT GGTCGCTCGA CGTCGCCGCA GCGGCGAGCG GCGCGCCGCC GGCGGCGCTG
AAAAGCTGGC GGGCCCAGAT CCTGACCGAG GAAAATCCGG TCCGTGTGCA TCGTGCGCTT
GCCGATGCCT ACGACGATTT CGCCTGGAGA GCCGCAGCAT GA
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| Protein sequence | MRWRQNEQLV IHPTVTALPA LRIGNIAVAN RVLLAPMSGI TDAPFRKQVA ALGAGLVVSE
MTASEDLVQG RAMSVRRCDA IDGAPHVVQL AGCEPHWMAE GARIAEAGGA DIIDINMGCP
ARHVTGGQSG SALMRDLDHA LTLIEATIDA VRVPVTLKMR LGWDERSLNA PELARRAEAA
GVQLVTVHGR TRSQFYKGEA DWRAVRAVRE AISIPLVVNG DITTYHMAVE ALDQSGADAV
MIGRGAQGQP WLPGQIGRRL QTGIAEAMPS LAEQFDYLRS LYDGVLSLYG QRIGLRHARK
HLGWSLDVAA AASGAPPAAL KSWRAQILTE ENPVRVHRAL ADAYDDFAWR AAA
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