| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2569 |
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| Symbol | |
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| ID | 4023063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2876048 |
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| End bp | 2877436 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637962765 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_569700 |
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| Protein GI | 91977041 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.103631 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCTTTA AGCCGGAATC GAACGACGCG GCCGGCATCG AAGCTGGAAC GAAGAATCTT
GCGTCACGGG CGCGGCGGCG CACGGTGTCG CTGCTGGTGA CTGCGATCAT CCTCGCCGGG
CTCGGCTACA TCGCCTGGAA TGCGTTCCAG ACCAAGCAAA CGCCGACCGG CCGCAACGGA
GCGCGACCGG ACATGGCCGT GCCGGTGCTG GCGGCGACGC CGAAGGTGCA GGACGTTCCG
GTGTATCTCG ACGGGGTCGG TTCGGTGCGG GCGCTCAACA CCGTCACGGT GCGCGCCCAG
GTCGACGGCA AGCTGCTGTC GGTGAAGTTC ACCGAAGGTC AGGACGTCAA GGCCGGCGAC
GTGCTCGCCG AGATCGACCC GGCAATCTAT CAGGCGCAAT ACGACCAGGC GGTCGCGAAA
AAAGCGCAGG ACGAGGCGCA GCTCGCCAAC GCCAAGATCG ATCTTGCCCG TTATCAGCAG
CTCGCGGCGT CGAACGCCGG CTCCAAGCAG CAGGCCGACA CGCAAAAGGC CACTGTGGCG
CAACTCGAGG CGCAGGTGCG CTCCGATCAG GCCGCGATCG ACAACGCCGC GGCGACGCTG
AGCTACACCA AGGTGGTCGC GCCGCTCTCC GGCCGCGCCG GTTTGCGCCA GGTCGATCAG
GGCAATCTTG TTCGCTCCGC CGACACCACC GGCTTGGTGG TGATCACGCA GCTGCAGCCG
ATCGCGGTGC AATTCAGCCT GCCGCAGCAG CAGATCGTGC GCGTCAACGC CGCATCGGCG
AAGGGCGCGC TGCCGGTCGA CGTGTTCGGC AATGACGGCG TCACCGTGGT CGACACCGGC
ATATTGAGAG GCATCGACAA TCAGGTCGAT CAGACCACCG GCACGGTGAA GCTGAAGGCG
GAGTTTCCCA ACGCCAGATT CCAGCTCTGG CCCGGCCAGT TCGTCAATGT GCGGCTCAAG
GTCGAAACGC TGAGCGCGGC CGTGGTGGTG CCGACATCGG CGGTGCAGCG CGGCCCGGCC
GGCACATTCA GCTATGTCAT CGACCAGGAC AACGTCGTCC ATGCGCGGCC CGTCAAGGTG
ACCCAGCAGA ACGAGACCGA GGCGGTGATC GCCAGCGGGC TCACGGCTGC GGACCGCGTC
GTCACCACCG GCTTCGCCAA TCTCGCTGAA GGCGCGAAGG TCGCCGTCGG CGACAGCAGC
CAGACGCCGA CCGCCGATCT TGCGCCGCGC AAGCGTCGGA GCGGCCCGCC GGGTGATCCG
CAGAGCAAGC AGGGCGAAGC CGGCACTGGC GAGCAGGGCA AGCGCCGGCG CGGGGCCGAG
CAGGGACCGA CCGGGCAGGC GGCTCCCGCC GCGGGAGCTG AATCGTCGGG GGCAGCGAAG
GCGCAGTGA
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| Protein sequence | MLFKPESNDA AGIEAGTKNL ASRARRRTVS LLVTAIILAG LGYIAWNAFQ TKQTPTGRNG
ARPDMAVPVL AATPKVQDVP VYLDGVGSVR ALNTVTVRAQ VDGKLLSVKF TEGQDVKAGD
VLAEIDPAIY QAQYDQAVAK KAQDEAQLAN AKIDLARYQQ LAASNAGSKQ QADTQKATVA
QLEAQVRSDQ AAIDNAAATL SYTKVVAPLS GRAGLRQVDQ GNLVRSADTT GLVVITQLQP
IAVQFSLPQQ QIVRVNAASA KGALPVDVFG NDGVTVVDTG ILRGIDNQVD QTTGTVKLKA
EFPNARFQLW PGQFVNVRLK VETLSAAVVV PTSAVQRGPA GTFSYVIDQD NVVHARPVKV
TQQNETEAVI ASGLTAADRV VTTGFANLAE GAKVAVGDSS QTPTADLAPR KRRSGPPGDP
QSKQGEAGTG EQGKRRRGAE QGPTGQAAPA AGAESSGAAK AQ
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