Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2568 |
Symbol | |
ID | 4023062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 2874610 |
End bp | 2876058 |
Gene Length | 1449 bp |
Protein Length | 482 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637962764 |
Product | RND efflux system, outer membrane lipoprotein, NodT |
Protein accession | YP_569699 |
Protein GI | 91977040 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0985785 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCATCG CGCTGCGCTA CCTGCGTCGG TCCGTGAGGA TGGTCGCTGC CTCGGCGCTC GTCGTCGGCG CGGGCGGCTG CATCCTGACC AAAGACCTGC CGGACCCGGC GCTCGACCTG CCGCCGCGCT ACAAGGCGGC GGCGCTGACG ACGACCGACG CGCCGCCTGC GCTCGATTGG TGGCGCGGCT TCCGCTCGCC CGAGCTGACG CAATTGATGG AAGAGGCGCA AACCGTCAAT CTCGACATCG CCGCGGCAAC CTCACGGATC CTGCAGGCCG ACGCCCAGGC GCGTATCACC GGCGCGGCGC TGCTGCCCTC GCTCACCGGC AACAGCAGCG GCTCGCAGAA CAAAACGTCG GGCAGCAATG TCAGCAACAC CACGATCGCC GGCCGCCGGT TTTCAACCTA TGCGGCTTCG CTGAGCGCGA GTTACGAGAT CGACTTCTGG GGCAAGAATC GCGACGCCGC GCTGGCGGCC GAGGAAACCG CGACCGCCAA CCGGTTCGAT CGCGATGTCG TCGCGCTGAC GACGATGGCG AGCGTCGCCA ATGCCTATTT CCAGGTGCTG GCCTCGCAGG ATCGAATCCG CACCGCGCAG GAGAATATCG CCAGCGCGCA GCGTATTCTC GACGCCATCA AACAGCGGCT GGCCGCCGGC ACCGGCAGCG ACCTCGACGT CGCGCAGCAG GAGAGCGTGC TCGCCAACCA GCGCGCCGCC GTGCCGCTGC TGCGAGTGAC GCTCGCGCAG AACATCAACA CGCTGGCGAC GCTGGTGTCG CGTCCGCCGG AAGCCGTGAA GATCCTCGGC GGCTCGCTCA ACAGGCTGAG CTCGCCGCTC GTGACGCCGG GGATGCCGTC CGAGCTGCTG ACCCAGCGAC CGGACATCCG CCGGCAGGAG GCGCAGCTCG CCGCCGCCAC CGCCAATGTC GGCAGCGCGC GGGCGCAATT CTTCCCGAGC ATCCAGCTCA CCGGGCAGGG CGGCTATCAG AGCGCGGTGC TGGCGTCGCT GTTCACGCCG CAGGCGACGT TTTCCAATCT CGCCGCCGGG CTGACGCAGC CGATCTTCGA CGGCGGTCGC ATCAGCGGCA ATTTCGACCT GACGAAGGCG CAGCAGGATG AGTTGCTGCA GACCTATCGC AAGACAGTGG TGTCGGCCTT CGCCGACGTC GACAATGCGC TCGAATCGAT CAAGCAGAAC ACCGAGCGGC TGCGGCTGCA GCGGCAGGTG GTGGCGTCGT CGCGGCGCGC TTTCAGCCTG GCCGAACAGC AACTACGCGC CGGCACGGCC GACATCGTGA CCGTGCTAAA CACGCAATTG ACACTATTTC AGGCGGAAGA TTCGCTGATC CAGACGCAGT TGGCGCGCTA TCTGGCGATT GTCAGTCTGT TTCAGGCGCT CGGGGGCGGC TGGGAGCCGA GGATGGAAAG ACCGGTCAAT GCTCTTTAA
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Protein sequence | MSIALRYLRR SVRMVAASAL VVGAGGCILT KDLPDPALDL PPRYKAAALT TTDAPPALDW WRGFRSPELT QLMEEAQTVN LDIAAATSRI LQADAQARIT GAALLPSLTG NSSGSQNKTS GSNVSNTTIA GRRFSTYAAS LSASYEIDFW GKNRDAALAA EETATANRFD RDVVALTTMA SVANAYFQVL ASQDRIRTAQ ENIASAQRIL DAIKQRLAAG TGSDLDVAQQ ESVLANQRAA VPLLRVTLAQ NINTLATLVS RPPEAVKILG GSLNRLSSPL VTPGMPSELL TQRPDIRRQE AQLAAATANV GSARAQFFPS IQLTGQGGYQ SAVLASLFTP QATFSNLAAG LTQPIFDGGR ISGNFDLTKA QQDELLQTYR KTVVSAFADV DNALESIKQN TERLRLQRQV VASSRRAFSL AEQQLRAGTA DIVTVLNTQL TLFQAEDSLI QTQLARYLAI VSLFQALGGG WEPRMERPVN AL
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