| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2560 |
|---|
| Symbol | |
|---|
| ID | 4023054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2865939 |
|---|
| End bp | 2867447 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637962756 |
|---|
| Product | amino acid ABC transporter permease |
|---|
| Protein accession | YP_569691 |
|---|
| Protein GI | 91977032 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.465302 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAC CTCGTTCGAC CACGCCTGCC TTCGTGCGAT CCGAGATGGT GCCCGAACGC
GCCGCGCCGG TACGAACCAC CGGATTCGTC GGCTTGGTCG GCGGACGTCT GTTCAGTTCG
CCGACCAACA TCCTGCTGAC GATCGTCGGC GCGCTGCTGC TGTATCTGAC CATCGTGCCG
AGTGTGAAGT TTCTGCTGGT CGACGCGGTT TGGACCGGTA GCAACCGCAC CGATTGTCTG
GCCGAGACGC TGCATCGCGA CGTCGGCGCA TGCTGGCCGT TCGTGCAGGC GAAGTTCTCG
CAGTTCGTCT ACGGCTTCTA TCCGCAGCCG GAGCGCTGGC GCGTCGACCT GACCTTCGCG
CTCGCCGCAG TGCTGCTGCT GCCGCTGCTG ATCCCGCGCG CGCCGGCGAA GACGCTGAAC
GCCGGGTTGT TTTTCATCGC GTTTCCGGTG GTCGCGTTCT TCCTGCTGCA TGGCGGCGGG
CTGCACGGCT TCGCGGTGAG CTGGACCGCC GATCTGTTGT CGAGTCTGGT CGGCAGCCTC
GACGAAGCGG GGACCAAGCT CACGCGCGGC GGCGTCATTG CAGTCGCCAT CGGCAAGCCG
GTGCTGTGGA TCGCCACCGC GCTGTATTGG CTGATCGCGC CGCTGGTCTG GCTGCGTGAC
TGGATCCAGG CGTCCGGCCA GCCGGTCTGG ATCGATCTCG GCCTGACGGC GGTGATCGTC
ACCGCGCTGG TTTTGTTGAT CGGCGGAGGC CTGCGCAATG GCGCGCGCGC GCCGCTGATG
TCGCTCGCGC TGTTCGCCGG CATCGCCTTG GTGATCGCGG TGTTGCGGCT CGACCGCGGC
GGGCTTCCGA TCGTCGGCAC GCGGCAGTGG GGCGGCTTGC TGGTGACGCT CGTCGTGTCC
GTCACCGGCA TCGTCGGCTC GATGCCGATC GGCATTGCGC TGGCGCTCGG CCGGCGCTCG
ACGATTCCGC TGATCCGGCT GTTCTGCATC GGCTTCATCG AATTCTGGCG CGGCGTTCCG
CTGATCACGG TGTTGTTCTT CGCGACTTAC ATGCTGCCGC TGTTCCTGCC CGGCAACTTC
ACCATCGACG GATTGCTGCG CGTGCTGATC GGCATTGCGC TGTTTGCCGG CGCCTACAAC
GCCGAAGTGG TGCGCGGCGG GCTGAACGCC ATTCCGCGCG GGCAGGGGGA AGCGGCGAGC
GCGCTCGGGC TTTCCTACGC GAAGACCACC GGGCTGATCG TGTTGCCGCA GGCGCTGCGC
CACGTCATTC CGGGCCTCGT CAACAGCTTC ATCGCGCTGT TCAAGGACAC CTCGCTGGTG
TCGATCGTCG CGCTGTTCGA TCTGCTCGGC CAGCTCCGCG CCGCCTTCGC CGATCCGACC
TGGTCGACGC CGAACACGCT GTTCACCGGC TTCGCCTTCA CCGGGCTGAT CTACTTCGTG
TTCTGCTTCG GCATGTCGCG CTATTCGTTG TTCGTCGAGC ATCGGCTCAA TGCCCACCGG
CGCACCTGA
|
|---|
| Protein sequence | MNEPRSTTPA FVRSEMVPER AAPVRTTGFV GLVGGRLFSS PTNILLTIVG ALLLYLTIVP
SVKFLLVDAV WTGSNRTDCL AETLHRDVGA CWPFVQAKFS QFVYGFYPQP ERWRVDLTFA
LAAVLLLPLL IPRAPAKTLN AGLFFIAFPV VAFFLLHGGG LHGFAVSWTA DLLSSLVGSL
DEAGTKLTRG GVIAVAIGKP VLWIATALYW LIAPLVWLRD WIQASGQPVW IDLGLTAVIV
TALVLLIGGG LRNGARAPLM SLALFAGIAL VIAVLRLDRG GLPIVGTRQW GGLLVTLVVS
VTGIVGSMPI GIALALGRRS TIPLIRLFCI GFIEFWRGVP LITVLFFATY MLPLFLPGNF
TIDGLLRVLI GIALFAGAYN AEVVRGGLNA IPRGQGEAAS ALGLSYAKTT GLIVLPQALR
HVIPGLVNSF IALFKDTSLV SIVALFDLLG QLRAAFADPT WSTPNTLFTG FAFTGLIYFV
FCFGMSRYSL FVEHRLNAHR RT
|
|---|
| |