| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2552 |
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| Symbol | |
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| ID | 4023046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2855996 |
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| End bp | 2858248 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637962748 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_569683 |
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| Protein GI | 91977024 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0465357 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGG CGCGGCCCAA CCCCAACGTG ACTGAAGCCG AGATGTCGTG TCCCGGGCGC
GGTGCAGCAC GCAGTGCTGC TCCGCAGACC CGGGACCCCG ATTCTGCGGC CGATGTCGCC
GGGGCCCCGG ATCAGCAGCG CACCACGCCG CAAGGGCGGC GCGCTGCGCT GCATCCGGGG
AACGGTCGCC TGTTACGAAA TGCCGCCGTC GCGGTATTCT TGATCGTTGC CTTGTCGATC
GGCGCCATCG CCGCTTACGT CGCCTCGCTC GGGCCGTTGC CGCTCGACGA GGCGCGCAAG
ACCTCGGTCA GCGTGGTCGA CCGTCACGGT AAGTTGCTAC GCGCTTATGC GATGACCGAC
GGCCGCTGGC GGCTGCCGGT CGATGCGAAG ACCGGCGTCG ACCCGCGTTT TCTCCAGCAA
CTCATCGCCT ATGAGGACAA GCGGTTCTGG TCGCATCACG GCGTCGACCC GCTGGCGACC
GGGCGAGCGG CGCTGCAGCT CGTCACCCGC GGCCGCATCG TATCCGGCGG CTCGACCATC
ACCATGCAGC TCGCGCGGCT GATGGAGCCG CGGCGCGAGC GGTCGCTCGG CGCCAAGTTG
CGCCAGATGG TCCGCGCCGT CGAGCTCGAG CGGAAGCTCG GCAAACACCA GATCCTCGAT
CTGTATCTCG CGCTGGCGCC CTATGGCGGC AATCTCGAAG GCGTCCGCGC CGCATCGATC
GCGTATTTCG GCAAGGAGCC GAAACGGCTG ACGCTCGCGG AGTCCGCGCT GCTGGTGGCG
TTGCCGCAAT CCCCCGAAAC CCGCCGGCTC GATCGCCATC CCGATGCGGC GAGAGCGGCG
CGCGATCGCG TTTTGGCGCG GATGGTCGAG GACGGCGTTG TCAGCGCCGA GGACGCCGCG
CAGGCGAGGG CGGCGCCGGT GCTGCGCCAG CGCAAGCCGA TGCCGGTGCT GGCGCCGCAT
TCCGCCGATC AGGCCGCCGC CTCGGTCAAG GACGCCCCGG TGATTCGGCT GACGCTCGAC
GCCGGGACCC AGCGGGCGTT GGAGGCGCTC GCCCGCGACC GCGCCACAGC GCTCGGCCCC
GACATCTCGA TCGGAATTGT CGCGGTGGAC AATGACAGCG GCGACGTGCT CGCCCATGTC
GGCTCGGCCG ATTATTTCGA CGACCGCCGC GCCGGGCAGG TCGACATGAC CCGTGCGGTG
CGTTCGCCCG GCTCGACGCT GAAGCCGTTC ATCTACGGGC TCGCCTTCGA GGACGGCTTC
GTCCATCCGG AAAGCCTGAT CGACGATCGA CCGGTACGGT TCGGCGCCTA TGCGCCCGAG
AATTTCGACA TGACGTTCCA GGGCACGGTG ACAGTCAGAA AGGCGCTGCA ATTGTCGCTG
AACGTTCCGG CGATCGAATT GCTGGATCGG GTCGGCTCCA GCCGATTGGC GTCGCGGCTG
AAGCAGGCCG GGGCAAGTCT GGTGCTGCCG AAGGACGAAG CGCCCGGGCT GGCGATGGGT
TTGGGAGGCG TGGGCGTCCG GCTGATCGAT CTGGTGCAGC TTTACAGTGG CGTCGCGCGG
CTCGGCAGCG TTGCCCCGTT GCGGGAGATC GCCAGCAAAA ACAATGGCGA GCGGGAGACT
CTGCGTCTGC TGGATAAAGT CGCGGCCTGG CAAATCGGCA ACGTTCTGAT CGGCACGCCG
CCGCCGGAAA ACGCGGCCCG TAACCAGATC GCGTTCAAGA CCGGCACCAG CTACGGCTAT
CGCGACGCCT GGTCGGTCGG ATTCGACGGC AAGATCACCA TCGGCGTCTG GGTCGGCCGG
CCGGACGGCG CTCCGGTCCC CGGGTTGATC GGCCGGGTCG CCGCCGCGCC GGTGCTGTTC
GACGCCTTCG GCCGCACCGG CCAGTTGCGC GCAGCGCTGC CAAAGCCGCC GCGCGGAACG
CTGACCGCCA GCAACACCCA ACTGCCGCTG CCGCTGCGCC GGTTCCGCTC GGCGGGCGAG
CTCGTCCGAT CCGGCAACGA GCAGGCGTTG CGAATCCAGT TTCCGCTGAA CGGCTCGCGG
ATCGACGCGC AGAGCCAGGC CTCTACCGGC GCGCTGCCGG TCAAGGTCGC CGGCGGCGTG
CTGCCGATGA CGGTGATGGT GAATGGCCTG TCGGCTGGCG AGATCGACGG CCGCCGCCAA
CGCCTGATCG CGCCGCCCGG TCCGGGCTTC GTCCGGCTCA CCGTGATGGA CGCAGTCGGC
GCTGCAGACA CAGTCGTTGT GAGAATCCAG TAG
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| Protein sequence | MSEARPNPNV TEAEMSCPGR GAARSAAPQT RDPDSAADVA GAPDQQRTTP QGRRAALHPG
NGRLLRNAAV AVFLIVALSI GAIAAYVASL GPLPLDEARK TSVSVVDRHG KLLRAYAMTD
GRWRLPVDAK TGVDPRFLQQ LIAYEDKRFW SHHGVDPLAT GRAALQLVTR GRIVSGGSTI
TMQLARLMEP RRERSLGAKL RQMVRAVELE RKLGKHQILD LYLALAPYGG NLEGVRAASI
AYFGKEPKRL TLAESALLVA LPQSPETRRL DRHPDAARAA RDRVLARMVE DGVVSAEDAA
QARAAPVLRQ RKPMPVLAPH SADQAAASVK DAPVIRLTLD AGTQRALEAL ARDRATALGP
DISIGIVAVD NDSGDVLAHV GSADYFDDRR AGQVDMTRAV RSPGSTLKPF IYGLAFEDGF
VHPESLIDDR PVRFGAYAPE NFDMTFQGTV TVRKALQLSL NVPAIELLDR VGSSRLASRL
KQAGASLVLP KDEAPGLAMG LGGVGVRLID LVQLYSGVAR LGSVAPLREI ASKNNGERET
LRLLDKVAAW QIGNVLIGTP PPENAARNQI AFKTGTSYGY RDAWSVGFDG KITIGVWVGR
PDGAPVPGLI GRVAAAPVLF DAFGRTGQLR AALPKPPRGT LTASNTQLPL PLRRFRSAGE
LVRSGNEQAL RIQFPLNGSR IDAQSQASTG ALPVKVAGGV LPMTVMVNGL SAGEIDGRRQ
RLIAPPGPGF VRLTVMDAVG AADTVVVRIQ
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