Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2526 |
Symbol | |
ID | 4023017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 2826482 |
End bp | 2828836 |
Gene Length | 2355 bp |
Protein Length | 784 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637962719 |
Product | tetratricopeptide TPR_2 |
Protein accession | YP_569657 |
Protein GI | 91976998 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.82201 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGGGCC ATTCACGATC GCGATCGATC GGGCTGATCG CCGGACTCGC CCTGGCCATC GTGCTGGCCG GAATTTCCGA ACGGCTGGTC GCTGAGCCCG TAACCCGACC CGCGCCACCG AACTTCGTCG GCAGCGAAAG CTGCGCCGGT TGCCACCCGG GCCAGGCGGC GCTTTGGCGC AAATCCCAGC ACAGCCACGC CATGGCGCAT GCGACCGAGA CGACAGTGCT CGGTGATTTC AACGATGCGC GTTTCGAGCA TTTCGGCGTG CCATCGCGGT TCTTTCGTCG GGATGGCAAG TTCATGGTGG AAACGGACGG GCCGGACGGC AAGCTGACGA CGTTCGAGGC GAAGTACACT TTTGGCATCG ATCCGCTGCA GCAATATCTG ATCGAATTCC CCGACGGTCG CCTGCAGGCG CTGACGATTG CTTGGGACGC ACGGCCGAAG GACAAAGGCG GGCAGCGCTG GTTTCATCTC TATCCGGACG AACGCATCGG GCACGACGAC GTGCTGCATT GGACCAGGCT GAACCAGAAC TGGAATTTCA TGTGCGCCGA GTGCCATTCT ACCGGCATTC GGAAGAACTA CGATGCGCAG ACTGATCGCT TCGCGACGAC ATGGGCTGAG ATCAGCGTCG GCTGCGAAGC CTGTCATGGC CAGGGCTCAA ATCACGTCGC ATGGGCGCAC GCCCGGCAGA GCGGGTGGCC GTCGGAAAAG TCGCTCGACG ATACGATGGG CCTGCTGGTG CGCTATGCCG AGCGGAGCAA CATCGGCTGG ACGCTCGATC CGAACACCGG AAACTCCGCG CGGAGCGCGC CGCCCGCGAT GCTCCGCACC GAAGTCGAGG CTTGTGGACG ATGTCACGCT CGGCGCGGCC AGTTGTTTGA GGATTGGGTG CCGGGACACT GGCTGTCCGA CAGCCACGTC GTCTCGCCTC TCGGCCGTGG GCTCTATCAC GCCGATGGGC AGATGCGCGA CGAGGTTTAC AACTACGGCT CGTTCAAGCA GAGCAAGATG TATGCTGCCG GCATCACGTG CAGCGACTGC CACGATCCGC ACAGCGGCAA GCCGCGGCAC AGTGGAGACA ATCTCTGCCT GCAATGTCAT TCAGCGGACA AATTCGCCAT CGCGTCGCAC CATCGCCACG CGGCGGTGGA TCCGCCGCTC GGCTGCGCGT CTTGCCACAT GCCGGTCCGG ACCTATATGG GCGTCGATCG GCGGCATGAT CACGGTTTCC GCGTCCCGCG TCCCGATCTG TCCGCGCAGT TGAATACCCC GAATGCCTGC AACGATTGCC ACGCCGATCG GACGCCGCAA TGGGCCGCCG CGGCAATCGA TAGCTGGCAC GGACCAAGCC GCAAGGGGTT CCAGACCTTC GCGCCGGCAT TGGCCGCGAG CTGGGCAGGC CGCGCCGATT CATCCAAATT GCTGGCTGCG GTGGCGGCCG ATCACGCCAC CCCCGACATC GTCCGCGCCA CGGTTCTGAC CGAGCTCAAT GCGTACGTAT CCGCGGAAAC GATGGAGCAG GCGAAGGCCG GTTTGTCGAA CCCCGATCCG ATGGTGCGGA TCGGAGCGCT CGATCTGCTC GAAGGCGGGC CGCCGCTGCA ATTGTGGGCG ATCGCTTCGC CGCTGCTGTC TGATCCCATT CGCGGCGTTC GCATTCGAGC GGCCTCGCTG CTCGCTTTGG TGCCCGCTGC GCAGCAGCCT GTTGCTGACC GCCCGCGGTT CCAGAGCGCC GCCGAGGAGT TCGTCGCTGC GCAGCGTCTC AACGCGGATC GGCCCGAGGC GCGATCGGCG CTGGGACGGT TCCTGCTGCA GCGCGGGCAG GTGACTGAGG CCGAGACGGA ATACAAAGCG GCCCTGCGCT TCAGCCCAGC CTATGCTCCT GCCGCGGTCA ATCTGGCCGA TCTGTACCGC CAGGGCGGCC GCGAGCCCGA AGGTGAAAGT GTGTTGCGCA CAGCCCTGAT AGCCGCACCG CGGGACGCCG AATTGCACCA TGTTCTCGGG CTGACCTTGG TGCGGTTGAA ACGGTATGAC GAAGCGATTG CCGAATTGCG CCAAGCTACC GAGCTTGAGC CCGACCGGGC ACGGTTTGCG TATGTCTACG CCGTCGCTCT ACACTCCGCG GGCCGCATGG CCGACGCCAT CTCCATTCTG AAACAGATCG CCGCCCGGCA TCCGCACGAC CGCGACACGA TGATGGCGGT CATCGCCTTC AGCCGAGACG CGGGAGACAT CGACACAGCG CTCGACTACG CCGAGCGTTT GGCCGCCGCC TTTTCGCAGG ACGCTGGCCT CGATCGCCTC GTTCGGGAGC TTCGACAACG GCTCCCAAAT CCCACCGCAC GATGA
|
Protein sequence | MSGHSRSRSI GLIAGLALAI VLAGISERLV AEPVTRPAPP NFVGSESCAG CHPGQAALWR KSQHSHAMAH ATETTVLGDF NDARFEHFGV PSRFFRRDGK FMVETDGPDG KLTTFEAKYT FGIDPLQQYL IEFPDGRLQA LTIAWDARPK DKGGQRWFHL YPDERIGHDD VLHWTRLNQN WNFMCAECHS TGIRKNYDAQ TDRFATTWAE ISVGCEACHG QGSNHVAWAH ARQSGWPSEK SLDDTMGLLV RYAERSNIGW TLDPNTGNSA RSAPPAMLRT EVEACGRCHA RRGQLFEDWV PGHWLSDSHV VSPLGRGLYH ADGQMRDEVY NYGSFKQSKM YAAGITCSDC HDPHSGKPRH SGDNLCLQCH SADKFAIASH HRHAAVDPPL GCASCHMPVR TYMGVDRRHD HGFRVPRPDL SAQLNTPNAC NDCHADRTPQ WAAAAIDSWH GPSRKGFQTF APALAASWAG RADSSKLLAA VAADHATPDI VRATVLTELN AYVSAETMEQ AKAGLSNPDP MVRIGALDLL EGGPPLQLWA IASPLLSDPI RGVRIRAASL LALVPAAQQP VADRPRFQSA AEEFVAAQRL NADRPEARSA LGRFLLQRGQ VTEAETEYKA ALRFSPAYAP AAVNLADLYR QGGREPEGES VLRTALIAAP RDAELHHVLG LTLVRLKRYD EAIAELRQAT ELEPDRARFA YVYAVALHSA GRMADAISIL KQIAARHPHD RDTMMAVIAF SRDAGDIDTA LDYAERLAAA FSQDAGLDRL VRELRQRLPN PTAR
|
| |