| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2502 |
|---|
| Symbol | |
|---|
| ID | 4022993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2796599 |
|---|
| End bp | 2797825 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637962695 |
|---|
| Product | lytic murein transglycosylase |
|---|
| Protein accession | YP_569633 |
|---|
| Protein GI | 91976974 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02283] lytic murein transglycosylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0535188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.354927 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGT TCGATTCCCG CTTCACGCCG ACCCGCCGCC GCCTGCTGCA GACCGCGCTT
GGCGCGGCCG TGATGCTGCC CGCGGCGGCG CGCGCCGCTC CGGCCGGCTT CGACGACTGG
CGCGACAAGT TCCGCAGCCG CGCCCTCGCC AAGGGCATCT CGCCGCAGAC CTGGGATCGC
GCGATGGCCC GGCTCGAGCC GGACATGAGC GTCTTCAAGA ACTTCCAGAA GCAGCCGGAA
TTCAACGAAC AGCTCTGGCA ATACATCAAC CGCCGCGTCT CCGACTGGCG GATCACCAAT
GGCCGCGAGG CGCTCAAGAA GAACGAGCCG CTGTTCGCGC GGATCGAGCG CGACTTCGGC
GTCGAGCGCG GCACGCTGCT GGCGCTGTGG GGCGTCGAGA GCGCCTATGG CGATCCGCTG
GTGCAGCAGA ACCACATGCG CCCGGTGTTT CCCTCGCTGG CCGCGCTGGC CTGGAACGAG
CCGCGCCGCC GCGCCTATTG GGAAACCGAG CTGATCAACG CGCTGAAGAT CGTCGACCGC
GGCTGGTCGA CGCCCGAGGA GATGCGCGGC TCCTGGGCCG GCGCGATGGG TCATACCCAG
TGGATGCCGG AGGTCTGGCT CAATGTCGGG ATCGACTACG ACCGCGACGG CCGGGTCTCG
CCGTTCGGCC GCCCCGACGA CGCGCTCGGC TCCAGCGCGA AATTCCTGGT CAATCGCGGC
AAGTATCATC GCGACGAACA TTGGGGCTAC GAGGTGCGCG GCCCGGGCGG CGCGATCAGC
GGCAGCCGCT CTTTTCTGGC CTGGTCGCGC TCCGGCGTCA CCCGCGTCGA CGGCGAACCG
TTTCCCGATC CACAGGCCAA TGCGCAGATG TGGGCGCCGG TCGAGGGCGG CCCGCAATTC
CTGCTGGGAC CGAATTTCTA CGCAGTAAGA AGTTACAACC CGTCGATGAA CTACGCTCTG
GCGATCTGCC ATCTCGGCGA TCGCATTCTC GGCGGCGGCC CGTTCGCCCA GCCGTTCCCG
GGCTCGGAGC GCACGATGAC GCTGGCCGAG GTGCAGGAGA TGCAGACCCG GCTGACCCGC
GCCGGCTTCG ACACCGGCGG CACCGACGGC CGCGTCGGCA ACGATACGAT GAAGGCGGTG
CGCGACTATC AGACCCGCGC CGGGATGCAA CCGGCCGATG GCTATGGCGG GCTGAAACTG
CTGGCGCGGC TGCGGCAGGG TCCGTAG
|
|---|
| Protein sequence | MTQFDSRFTP TRRRLLQTAL GAAVMLPAAA RAAPAGFDDW RDKFRSRALA KGISPQTWDR
AMARLEPDMS VFKNFQKQPE FNEQLWQYIN RRVSDWRITN GREALKKNEP LFARIERDFG
VERGTLLALW GVESAYGDPL VQQNHMRPVF PSLAALAWNE PRRRAYWETE LINALKIVDR
GWSTPEEMRG SWAGAMGHTQ WMPEVWLNVG IDYDRDGRVS PFGRPDDALG SSAKFLVNRG
KYHRDEHWGY EVRGPGGAIS GSRSFLAWSR SGVTRVDGEP FPDPQANAQM WAPVEGGPQF
LLGPNFYAVR SYNPSMNYAL AICHLGDRIL GGGPFAQPFP GSERTMTLAE VQEMQTRLTR
AGFDTGGTDG RVGNDTMKAV RDYQTRAGMQ PADGYGGLKL LARLRQGP
|
|---|
| |