| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2484 |
|---|
| Symbol | |
|---|
| ID | 4022975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2775572 |
|---|
| End bp | 2777626 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637962677 |
|---|
| Product | DNA topoisomerase IV subunit B |
|---|
| Protein accession | YP_569615 |
|---|
| Protein GI | 91976956 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.185915 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGG CATTGAAGCC GAGCAGCAAA TCGAAATCCG CGGGTGACCT GTTCGGGGCC
GCGCCGAAAT CCGCCGCGCC GCGCCCGGCC GCCAAGCCGA CCGGCGGTGC CGAGGCCGGC
TACACCGCCG CCGACATCGA GGTGCTGGAA GGGCTGGAGC CGGTTCGCCG CCGCCCCGGC
ATGTATATCG GCGGCACCGA CGAAAAGGCG CTGCACCACC TGTTCGCCGA AGTGATCGAC
AACTCGATGG ACGAGGCGCT GGCCGGCCAC GCCACCTTCA TCGAGGTCGA ATTGACCACC
GACGGCTTCC TCACTGTCTC TGATAACGGC CGCGGCATTC CCGTTGATCC GCATCCGAAA
TTTCCGAAAA AATCCGCGCT CGAAGTGATC ATGTGCACGC TGCATGCCGG CGGCAAATTC
GACAGCAAGG TGTACGAGAC CTCGGGCGGT CTGCACGGCG TCGGCGTCAG CGTCGTCAAT
GCGTTATCGT CGCTGCTTGA AGTGGAGGTC GCGCGCGGCC AGCAGCTCTA CCGCATGGTG
TTCGCGCGCG GCATCCCGCA GGGCAAGCTC GAGAGCCTCG GCAAGATCAA CAACCGCCGC
GGCACCCGCG TCCGCTTCAA GCCCGACGCC GACATTTTCG GCGCCAAGGC GGCGTTCAAG
CCGCAGCGTC TGTTCAAGAT GGCGCGCTCG AAGGCCTATC TGTTCGGCGG CGTCGAGATC
CGCTGGAAGT GCGATCCCGA ATTGCTGAAG GGCCTTGAGG ATGTCCCCGC CGAGGACACG
TTCCACTTCC CCGGCGGCCT CAAGGACTAT CTCGGCGCGG CGATCCACGC CGACACGCTG
GTGCATCCCG ACATCTTCTC CGGCAAGTCC GGCCGCAACG GCGCCCATGG CGCGTGCGAA
TGGGCGGTGG CCTGGACCGC GGACGCCGAC GGCTTCCTGT CGTCCTATTG CAACACCGTG
CCGACGCCCG ACGGCGGCAC CCACGAATCC GGCATGCGCT CCGCCCTGCT CCGCGGCCTG
AAGGACCACG CCGAGCGCGT CGGCCAGGGC AAGCGCGCCT CGTCGATCAC CTCCGAAGAC
GTCATGGTCG GCGCCGCGGT GATGCTCTCG GTGTTCGTGC GCGAGCCGGA GTTCCAGGGC
CAGACCAAGG ACCGCCTCGC CACCGCCGAA GCCCAGCGCA TCGTCGAACA GGCGATCAAG
GACCCGTTCG ACCACTGGCT GTCCGGCAAT CCGGTGCAGG CCAACAAGCT GCTCGACTTC
GTCGTCGAGC GGGCCGAGGA GCGGCTGCGC CGCCGCCAGG AAAAGGAAAT CTCGCGCAAG
ACCGCGGTCA AGAAGCTGCG TCTGCCCGGC AAGCTCGCCG ACTGCACCAA TACCGCCGCC
GAAGGCTCCG AGCTGTTCAT CGTCGAGGGC GACTCGGCCG GCGGCAGCGC CAAGCAGGCG
CGCGACCGCA AGACCCAGGC CGTGCTACCG TTGCGCGGAA AGATCCTCAA CGTCGCCTCG
GCGACCAAGG ACAAGGTGGT GGCGAACGCC CAGCTCTCCG ACCTGATGCA GGCGATCGGC
TGCGGCACCG GCGTGAACTA CCGCGAGGAA GATTTGCGCT ACGCGCGCAT CATCATCATG
ACCGACGCCG ACGTCGACGG CGCGCATATC GCCTCATTGC TGATCACGTT CTTCTACCGG
CAGATGCCGA AGCTGATCGA CGAGGGCCAC CTCTATCTCG CGGTGCCGCC GCTGTATCGG
CTGACCCACG GCGCCAAGAC CGTCTACGCC CGCGACGACG CCCATAAGGC AGAGTTGCTG
AAGAAGGAAT TCAACGCCAA CGCCAAGGTC GATGTCGGCC GCTTCAAGGG CCTCGGCGAG
ATGATGCCGG CGCAGCTCAA GGAAACCACC ATGGACCCGG CGAAGCGCAC GCTTCTCCGC
GTGGTCCTGC TGCCCGACGA CCGCGAAGGC ACCGCGGATT CCGTCGAGCG CCTGATGGGC
ACCAAAGCCG AAGCAAGGTT CGCCTTCATC AGCGACAAGG CCGAGTTCGC GAGCGAGGAT
CTGCTGGACG TGTGA
|
|---|
| Protein sequence | MAKALKPSSK SKSAGDLFGA APKSAAPRPA AKPTGGAEAG YTAADIEVLE GLEPVRRRPG
MYIGGTDEKA LHHLFAEVID NSMDEALAGH ATFIEVELTT DGFLTVSDNG RGIPVDPHPK
FPKKSALEVI MCTLHAGGKF DSKVYETSGG LHGVGVSVVN ALSSLLEVEV ARGQQLYRMV
FARGIPQGKL ESLGKINNRR GTRVRFKPDA DIFGAKAAFK PQRLFKMARS KAYLFGGVEI
RWKCDPELLK GLEDVPAEDT FHFPGGLKDY LGAAIHADTL VHPDIFSGKS GRNGAHGACE
WAVAWTADAD GFLSSYCNTV PTPDGGTHES GMRSALLRGL KDHAERVGQG KRASSITSED
VMVGAAVMLS VFVREPEFQG QTKDRLATAE AQRIVEQAIK DPFDHWLSGN PVQANKLLDF
VVERAEERLR RRQEKEISRK TAVKKLRLPG KLADCTNTAA EGSELFIVEG DSAGGSAKQA
RDRKTQAVLP LRGKILNVAS ATKDKVVANA QLSDLMQAIG CGTGVNYREE DLRYARIIIM
TDADVDGAHI ASLLITFFYR QMPKLIDEGH LYLAVPPLYR LTHGAKTVYA RDDAHKAELL
KKEFNANAKV DVGRFKGLGE MMPAQLKETT MDPAKRTLLR VVLLPDDREG TADSVERLMG
TKAEARFAFI SDKAEFASED LLDV
|
|---|
| |