| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2468 |
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| Symbol | |
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| ID | 4022959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2758068 |
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| End bp | 2759957 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637962661 |
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| Product | peptidase C14, caspase catalytic subunit p20 |
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| Protein accession | YP_569599 |
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| Protein GI | 91976940 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4249] Uncharacterized protein containing caspase domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0996556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.406351 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGGCGC GCGGCAATTG CTATAGCAAA GTTCTTTCGC GTTCGATTTC AACTCTCGCA
GCAATCGCCT CGGTCCTGCT GCTTGCCAAT CCGGCTTTCT CGCAAGGCCA GGCGCTGGAA
CGCTGTCGCG AAACCGTCGG CAGGCCGATC GTCATGCCTT GCATGAAGGC AGGCGGAACG
CTGGAGTCCT GCCGTGCGCT GGCAACGCCG AAGGTCAGGG CCTGCGTCCA GGCCGCCATG
GGCGGTGGTA TGGGCGGTGG TCCCGGCGGT GCCGGCAGGC AGGGCCCCGG TGGCTTGAAC
CAGCCGCGTT CGGCCGCGGG GCCGGCGGTC GGCAAGGCGC GATCGCTGAT CGAGCAGGGC
AAATATGCCG GAGCGATCGT CGAACTCGAT CGGGCCGTGA AGCAGGATCC GAAATTTCCC
TTTGCCTACG CTTGGCGCGG TGTCGCCAAA ATGCGGATTG GAAAATTCGA CGAAGCCATG
TCTGACTTCA ACGAGGCGTT GAAGCTGGAT CCGCGCAATG CGTTCGCGCT GGGTCAACGT
GGCAACGCGT TCTTTGCGCT GCGTGACAAC GGCAAGGGAT TGGCGGACGT CAATGCGGCC
CTCGAGATCG ACAATACCGC AGCCGCCCCC TACGCCTTCA GGGGAATGAT CTATTCGGAC
ATGGGCGACC AAGACAAGGC ATTGGCCGAC CTGACCCGAG CCGTAAAGCT GAATCCGAAC
CTGCCCCCCG CTCATGGAGG ATTGGGATCA GTTTACAGCA AGCTGCAGGA GTTTGAAAAA
TCGCTGGCGG CTTACAACAG GGCGCTCGAG CTGGCGCCAA ACACCGCTGC CTATCTCAGC
GGCAGAGGCT ATGTCCATTT CAGTCTCGGC GAGTATGACC GCGCGATCAC CGATATTTCG
CAGGCCATCG CGATCAACTC CAGATTTGCC CGCCCCTACA TCAACCGCGG CCGCGCCTAT
ATCGCGACCA ACAATCTGTC GGCGGCAATC AAGGATTTCG ACGAGGCACT CAAGATCGAG
CCGAAGAACA TAACCGCTCT GCTCCAGCGC GCGCAGGCGT TCGAACGTTC GCGCGATTTC
GCCAAGGCGC AAGCCGACCT TCAGGACGCG TTGAAACTGG TTCCTTCGCA CCCCGTCGCC
GTCGCGGGCA TCGAGCGGAT CGACGCCAAA ATGGGCGCCA CCCGTCCGGG CACGGAGCGA
ACCGGTGGAC GTATCGCTCT GGTGATCGGC AATTCGAAAT ATGAGGCATT CGACACGCTC
GCAAATCCCA AACGGGATGC TGCTGCCATT GCGGACGCGC TCGGGAGATC CGGTTTCCAG
AACGTCAAGC TGCTGACAGA CGTGAACCGG GACTCGCTTT TGGCTGCACT TAAAACCTTC
ACCGACGAGA GTAAAAACGC CAACTGGTCG GTCGTTTATT TTGCCGGTCA CGGCATTGAA
CTCGACGGCA GCAATTATCT CGTTCCGGTC GACGCGAAAT TCGAGAACGA TGCCAATATT
CCGAACGAAG GCGTTGCCCT CGATCAGGTC CTCAACGCAG TCGGCGCAGC CGACAAGATG
CGTCTCGTGA TCCTGGACGC CTGCCGCGAG AATCCCTTCG CCGCAGAGAA GAAATCACTC
TCGGTCGGCA GAGGCCTCGC GCGTATCGAA CCCGAAAGCG GCACGCTGGT GGCGTTTGCC
ACCAAGCACG GCCACTACGC GACCGACGGC TCCGGCGACA ACAGCCCGTT CGCGACGTCG
CTGGTCCGGC TCATGGACGC GCCGGGTCTC GAGATCAACC AGCTATTCCG GATGGTGCAT
GACGACGTCT ACGCCAGCAC CGCGAAGAAG CAAGAGCCGT TCACCTACGG GCAGTTGTCG
GCTCAGGGTT TCTATTTCAA GGCAAGATAG
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| Protein sequence | MWARGNCYSK VLSRSISTLA AIASVLLLAN PAFSQGQALE RCRETVGRPI VMPCMKAGGT
LESCRALATP KVRACVQAAM GGGMGGGPGG AGRQGPGGLN QPRSAAGPAV GKARSLIEQG
KYAGAIVELD RAVKQDPKFP FAYAWRGVAK MRIGKFDEAM SDFNEALKLD PRNAFALGQR
GNAFFALRDN GKGLADVNAA LEIDNTAAAP YAFRGMIYSD MGDQDKALAD LTRAVKLNPN
LPPAHGGLGS VYSKLQEFEK SLAAYNRALE LAPNTAAYLS GRGYVHFSLG EYDRAITDIS
QAIAINSRFA RPYINRGRAY IATNNLSAAI KDFDEALKIE PKNITALLQR AQAFERSRDF
AKAQADLQDA LKLVPSHPVA VAGIERIDAK MGATRPGTER TGGRIALVIG NSKYEAFDTL
ANPKRDAAAI ADALGRSGFQ NVKLLTDVNR DSLLAALKTF TDESKNANWS VVYFAGHGIE
LDGSNYLVPV DAKFENDANI PNEGVALDQV LNAVGAADKM RLVILDACRE NPFAAEKKSL
SVGRGLARIE PESGTLVAFA TKHGHYATDG SGDNSPFATS LVRLMDAPGL EINQLFRMVH
DDVYASTAKK QEPFTYGQLS AQGFYFKAR
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