Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2444 |
Symbol | |
ID | 4022935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 2726062 |
End bp | 2728554 |
Gene Length | 2493 bp |
Protein Length | 830 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637962637 |
Product | penicillin-binding protein 1A |
Protein accession | YP_569575 |
Protein GI | 91976916 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.257563 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGATTGC TGCTGCGGTT TTTCGGCTTT CTGTTCGCAG CCGGGACGAT CGTGTTTCTG GTCGGCGTCG CCGGCGCGGC CGGGATGATC TGGCACTTCT CCAAGGACTT GCCCGACTAC TCTCAGCTCC AGGATTATGA GCCGCCGGTG ATGACCCGCG TCCACGCATC GGACGGATCG CTGCTCGGCG AATACTCCAA GGAGCGTCGG CTGTATCTGC CGATCCAGGC CGTGCCGAAG CCGGTGATCA ACGCCTTCCT CGCCGCCGAA GACAAGAACT TCTACGAGCA CGGCGGCATC GACTATTCGG GCATGGCGCG CGCCGCGATC CTGTACGCCC AGAACATCGG CTCCAACCGC CGTCCGCAGG GCGCTTCGAC GATCACTCAG CAGGTCGCCA AGAACTTCCT GCTCACCAAC GAGGTGTCCT TTACCCGTAA GATCAAGGAA GCCTTGCTGG CGATGCGGAT CGAGCGCGCC TATTCGAAGG ACCGCATTCT CGAACTGTAT CTCAACGAGA TCTATCTCGG TCTCGGTGCC TACGGAATCG CCGCAGCCTC GCTGGTGTAT TTCGACAAGT CGGTGAACGA ACTGACGGTG TCGGAGGCGG CCTATCTGGC CGCTCTGCCG AAGGCGCCCG CGGTGCTGCA CCCGATCCGC AACCACGACC GCGCGGTCGA GCGTCGCAAC TACGTGATCG ACCGCTTGCT CGAGAACGGC TGGGTCAAGC AGGCCGACGC CGACAAGGCG CGCAAGGAGC CGCTGACCGT CACCAGCCGC AGCACCGGCG CGCACACCTT CGCCGGCGAA TACTTCGCCG AGGAGGTTCG CCGCGACATC TTCGAACGCT ACGGCGAGAA GAAGCTGTAT GAAGGCGGGC TGTCGGTGCG CACCACGCTC GATCCCAAGC TGCAGGTCGA GGCGCGCAAG ACCATGACCG CCGGCCTCGT CAAATTCGAC GAGGCGCAGG GCTGGCGCGG GTCGGCGTCG AAGCTCGACA TCAGCGGCGA CTGGGGCGTC AAACTCGCCG ACGTCAAATC ACTGTCCGAC ATCTCGCCCT GGCGGATGGC CGTGGTGCTG GACACCTCCG ATCAGTCGGC GCGGATCGGC TTCCAGCCGG GCCGTGAACT CGGCGGCGCG GTATCGAAGC AGCGCGAGAC CGGGCTGATC ACGCTCGACG GCGTGAAATG GGCGAAACCG GCGGCCGGCC CGCAGCGCGG CCGGACCCCC GGATCGGTCT CGCAGGTGCT GGCGGCCGGC GACATCATCT ATGCCGATCC GCTGCTCGAC AAGGAGGGCA AGCCGGTCGA GGGACAATAC CGGCTGCGCC AGATCCCCGA AGTCTCGGGC GCGATGGTGG CGATGGACCC GTGGACCGGC CGCGTGGTGG CCATGGTCGG CGGCTTCTCG TTCGACCAGA GCCAGTTCAA TCGCGCCACC CAGGCCTATC GGCAGCCCGG CTCGTCGTTC AAGCCGCTGG TGTATTCGGC GGCGATGGAC AATGGCTATA CGCCGTCGAC CGTGGTGGTG GACGCCCCGA TCGAGATCGA TCAGGGCCAG GGCGCCGCCG TGTGGCGACC GGAGAACTAT TCGACCGGCA AGTATTACGG CCCGCAGACC CTGCGCAACG CGCTGCAGAA ATCGCTCAAC ACCGTGACGG TTCGATTGGC TCAGGATGTC GGAATGCCGC TGATCGGCGA ATACGCCAAG CGGTTCGGCG TCTATGACGA ACTGCCGAAC TATCTATCCT ATGCGCTCGG CGCCGGTGAG ACCACGGTGA TGCGGATGGT CACCGCCTAT TCGATGTTCG CCAATGGCGG GCGGCGGGTG AAGGCGACGC TGATCGACCG TATCCAGGAC CGCTACGGCC GCACCATCTT CAAGCACGAC GCCCGCGAAT GCCGCGGCTG CGACGCGCCG GAAGGGTGGA AGAACCAGGC CGAGCCACAG CTCATCGATC GCCGCGAGCA GGTGCTCGAT CCGATGACGG CCTACCAGAT CACGTCGATG ATGGAGGGCG TGGTGCAGGC CGGCACCGCG ACGGTGCTGC GTGAGGTCGG CAAGCCGATC GCGGGCAAGA CCGGCACCAC CAATGACGAG AAGGACGCCT GGTTCATCGG CTTCTCGCCG GATCTCGTGG TCGGCATCTA TTTCGGCTAC GACAAGCCGC GCAATCTCGG CCGCGGCGCC ACCGGCGGGC ATCTCGCGGC TCCGGTCGCC AAGGACTTCT TCAAGCTCGC GCTCGCCGAC AAGCCGGCGG TGCCGTTCCG CGTGCCGGCC GGCATCAAGC TGATCCGCGT CGACGCCAAG AGCGGAATGC GCGCCGGCCC GGGCGACGGC GGCCGCACCA TTCTCGAGGC GTTCAAGCCG GGCACCGCGC CGCCGGACAA TTATTCGGTG ATCGGCGTCG CCGACGCAGA AGGTCGCCAG CAGCAGATGG CGCCGCCCGA CGATCGCGGC TTCATGCGAC CGGGGACGGG CGGCCTCTAC TGA
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Protein sequence | MRLLLRFFGF LFAAGTIVFL VGVAGAAGMI WHFSKDLPDY SQLQDYEPPV MTRVHASDGS LLGEYSKERR LYLPIQAVPK PVINAFLAAE DKNFYEHGGI DYSGMARAAI LYAQNIGSNR RPQGASTITQ QVAKNFLLTN EVSFTRKIKE ALLAMRIERA YSKDRILELY LNEIYLGLGA YGIAAASLVY FDKSVNELTV SEAAYLAALP KAPAVLHPIR NHDRAVERRN YVIDRLLENG WVKQADADKA RKEPLTVTSR STGAHTFAGE YFAEEVRRDI FERYGEKKLY EGGLSVRTTL DPKLQVEARK TMTAGLVKFD EAQGWRGSAS KLDISGDWGV KLADVKSLSD ISPWRMAVVL DTSDQSARIG FQPGRELGGA VSKQRETGLI TLDGVKWAKP AAGPQRGRTP GSVSQVLAAG DIIYADPLLD KEGKPVEGQY RLRQIPEVSG AMVAMDPWTG RVVAMVGGFS FDQSQFNRAT QAYRQPGSSF KPLVYSAAMD NGYTPSTVVV DAPIEIDQGQ GAAVWRPENY STGKYYGPQT LRNALQKSLN TVTVRLAQDV GMPLIGEYAK RFGVYDELPN YLSYALGAGE TTVMRMVTAY SMFANGGRRV KATLIDRIQD RYGRTIFKHD ARECRGCDAP EGWKNQAEPQ LIDRREQVLD PMTAYQITSM MEGVVQAGTA TVLREVGKPI AGKTGTTNDE KDAWFIGFSP DLVVGIYFGY DKPRNLGRGA TGGHLAAPVA KDFFKLALAD KPAVPFRVPA GIKLIRVDAK SGMRAGPGDG GRTILEAFKP GTAPPDNYSV IGVADAEGRQ QQMAPPDDRG FMRPGTGGLY
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