| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2442 |
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| Symbol | |
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| ID | 4022933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2720723 |
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| End bp | 2723854 |
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| Gene Length | 3132 bp |
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| Protein Length | 1043 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637962635 |
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| Product | ribonuclease |
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| Protein accession | YP_569573 |
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| Protein GI | 91976914 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.26344 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAACA AGATGCTGAT CGACGCCACC CACCCGGAAG AGACCCGGGT GGTCGTGGTC
CGCGGCAACC GCGTCGAAGA GTTTGATTTC GAGACTGCCC AGCGCAAACA ACTGCGCGGC
AACATCTACC TCGCCAAAGT CACCCGGGTC GAGCCGTCGC TGCAGGCCGC CTTCATCGAG
TACGGCGGCA ATCGTCACGG CTTCCTCGCC TTCAGCGAAA TCCATCCCGA TTACTATCAG
ATCCCGGTTG CAGACCGTCA GGCTCTGATC GAGGCGGACG AGCGCGCCCA TCGCGAGGCC
GAGGAAGAGA GCGAGCAGCG CTCCACCCGA CGCCGTTCAA GGCATCGCAG CCACCGCCGC
CGCGGCAATG GCGAGCGGGT GCAGAGCGAG ATCGTCGACG CGTCGGCCGA TCAGCCGCAC
GTCGATTCCG CTGACCATCA CCACGACGGA CAAGCGCATC CCGACCACGA ACGGCCGATG
CACGAGCTGG TGGAGCACGA GTCCAGCTAC GCGCCTCAGG CCTCGTCGTC CGACGCAGAG
GGCGATCACG CCCACGGCGG TCCCGACCAC CAGGAAAACC ATGCCGACGC GGGCGATCAC
GGGCACGATG AGCCGGCGGC TGCGCCGAGC ATCGTCGCCG AGGCCGCGCC CGACGCTCCG
CCGCTGACCT CCTCCGCTCC GATCGCGCCG GAAACCGATT CCGATGAGCG CGGCTCCGAA
GATCAGGGCG GCTACGCCGA GGATGCGCCG TTCCCGATCG CGGAGACCGT CAGCGCCGAG
CATCACGACG ACGAGCACGA CCATGACGCC GGTGACGATC TGATCGACAG CGACGCCGAC
TCCGAAGGCG ACGACGAAGC GGACGACGAG GACGACGACG AGGCCGAAGA AGACATCGTC
GAATCCGTTG GTGGCGACGA CGTGCTGGAA GAAGTTCCGG AGCGCGCTTT CCGGCCCCGC
CGCCAGTACA AAATTCAGGA AGTCATCAAG CGCCGCCAGG TGATGCTGGT GCAGGTGGTC
AAGGAAGAGC GCGGCAACAA GGGCGCGGCG CTGACCACCT ATCTGTCGCT GGCCGGACGC
TACGCCGTGC TGATGCCGAA CACCGCGCGC GGCGGCGGCA TCAGCCGCAA GATCACCTCG
GCGCAGGATC GCTCGCGCCT GAAGGAAGTG GTGCAGGACC TCGACGTGCC GGAAGGCATG
GGCATCATCC TGCGCACCGC CGGCGCCGCG CGCACCAAGC CGGAGATCAA GCGCGACTTC
GAATATCTGA TCCGGATGTG GGAGACGGTC CGCGACGTCA CCCTGAAATC GCAGGCGCCG
ACGCTGGTCT ACGAGGAAGG CTCGTTGATC AAGCGCTCGC TGCGCGACCT CTACAACAAG
GAAATCGACG AAATCCAGGT GGCGGGCGAG CCCGGCTATC AGGAAGCGCG CGACTTCATG
CACATGCTGA TGCCCTCCAA CGTCCGCGCG GTGAAGCTGT ATCGCGACGG CCAGCCGCTG
TTCTCGCGGA TGGGGGTGGA GAGTCAGCTC GACGCGATGT TCTCGCCGAC CGTGCAACTG
CGCTCCGGCG GCTACATTGT CCTCAACCAG ACCGAAGCGC TGGTCTCGAT CGACGTCAAT
TCCGGCCGCT CGACCCGCGA GCACCATATC GAGGATACCG CGCTCAAGAC CAACATGGAG
GCCGCCGAAG AAGTCGCGCG GCAGCTCCGG TTGCGTGACC TCGCCGGCCT GATCGTCATC
GACTTCATCG ACATGGACGA GAAGCGCAAC AACCGCGCAG TCGAGCGCAA GCTCAGCGAC
TGCCTGCGGC AGGATCGCGC CCGCATCCAG GTCGGACGCA TCTCGCATTT CGGCCTGCTC
GAAATGTCGC GCCAGCGGAT TCGCGCAAGC GTGCTCGAGA GTTCAACCGA GCCCTGCGCG
CATTGCGGCG GAAGCGGCCA CGTTCGCTCA GTCTCCTCGG TGGCGCTGCA ATTGCTGCGC
GGCCTTGAAG AGATCCTGAT GAAGGGCGCG ACCCACAATC TGATCGTGCG CACCCGCAAC
GACGTCGCGC TCTACGTCCT CAACCAGAAG CGCGGCCACC TTCGCGACCT CGAGACCGGC
TTCAAGGTGA CGCTGTCGGT GATGGCTGAC CCCACTGTGA CCGGACAGCA GTCGTTCGTG
ATCGATCGCG GCGAGCAGGT CCACACGCTG GAAGCCGCCA AGGCGCTGCT CGCGGCGCAG
GTTGCGGCTG CTCCGGCGCA GCCTGAAGAA TTGCCGTATG AGGACGACGA GAGCTACGAG
TTCGAAGCCG AGATCGAGAC CGACGAAACC GTCGGCCTGA CCGGCGAGTC GGCCGGCGAC
AGCATCGAAG CCGAAGGCGA AGGCGACGCC CGCAAGCGCA AGCGCCGCCG CCGCCGCCGG
CCGCGCACCG GCGAGGCCCG TGACGCGGGC GCGCCGCGCG AGGATGGCGA AGCTGCGCTC
GTTGCCGAGG GCGCGGAAGC CGCTGCCGAG GACGATAGCG AAGACGGCGA AGACAGCGCC
GAGGGCGAAG GCGAAGCACG CGCCGATCAG GCCGGCGAAC GTCGTCCGCG TCGCCGTGGC
CGCCGCGGCG GTCGCCGCCG GCGCGGCGCT GCGGAAGGCG GCCTCGAGGA CGGCGCATCC
GGCTCGATTT CCGACGAACT CGGCGAGTTG GAGACCTCGG AGGCTGCCGA CGCCGTCGCC
GATATGGACG GCGCATCGTC AGGCGAGCAG TTGCTGGGCA AGCGGCACGA GCCTGATGCA
GACGATGATG ATCATGCGGT TGCCGAGCCC GTCGCAGCTG CGCCTGCGCC CGTCGCCGTG
AGCGAACCGG AAAAGGCCGA GCCTGCGGCT CCGCAGAGTG CGGCTCCGCA GAGCGAGCCG
GTTTCGTCCG CTCAGGCCCA GGACGATGCT GCGGCCGAAA GGGCCGCACG TCGCCGCTCC
ACCGTCCGCG AGAAGGTGAA TTTCGGTTCG ACCGAGCCGA AGCCGGAAGT CTCGATGCCG
CCGGCGGCCG AACCGGCCCC GCAGCCCGAG CCCGCAGCCC CTGCCCCGGC GCCACAGGCG
GCGGACGAGT CCACGCCGGA AGCGCCGCGC CGCGCCGGCT GGTGGTCCCG CCGCTTCGGT
GGCGGAAGCT AA
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| Protein sequence | MPNKMLIDAT HPEETRVVVV RGNRVEEFDF ETAQRKQLRG NIYLAKVTRV EPSLQAAFIE
YGGNRHGFLA FSEIHPDYYQ IPVADRQALI EADERAHREA EEESEQRSTR RRSRHRSHRR
RGNGERVQSE IVDASADQPH VDSADHHHDG QAHPDHERPM HELVEHESSY APQASSSDAE
GDHAHGGPDH QENHADAGDH GHDEPAAAPS IVAEAAPDAP PLTSSAPIAP ETDSDERGSE
DQGGYAEDAP FPIAETVSAE HHDDEHDHDA GDDLIDSDAD SEGDDEADDE DDDEAEEDIV
ESVGGDDVLE EVPERAFRPR RQYKIQEVIK RRQVMLVQVV KEERGNKGAA LTTYLSLAGR
YAVLMPNTAR GGGISRKITS AQDRSRLKEV VQDLDVPEGM GIILRTAGAA RTKPEIKRDF
EYLIRMWETV RDVTLKSQAP TLVYEEGSLI KRSLRDLYNK EIDEIQVAGE PGYQEARDFM
HMLMPSNVRA VKLYRDGQPL FSRMGVESQL DAMFSPTVQL RSGGYIVLNQ TEALVSIDVN
SGRSTREHHI EDTALKTNME AAEEVARQLR LRDLAGLIVI DFIDMDEKRN NRAVERKLSD
CLRQDRARIQ VGRISHFGLL EMSRQRIRAS VLESSTEPCA HCGGSGHVRS VSSVALQLLR
GLEEILMKGA THNLIVRTRN DVALYVLNQK RGHLRDLETG FKVTLSVMAD PTVTGQQSFV
IDRGEQVHTL EAAKALLAAQ VAAAPAQPEE LPYEDDESYE FEAEIETDET VGLTGESAGD
SIEAEGEGDA RKRKRRRRRR PRTGEARDAG APREDGEAAL VAEGAEAAAE DDSEDGEDSA
EGEGEARADQ AGERRPRRRG RRGGRRRRGA AEGGLEDGAS GSISDELGEL ETSEAADAVA
DMDGASSGEQ LLGKRHEPDA DDDDHAVAEP VAAAPAPVAV SEPEKAEPAA PQSAAPQSEP
VSSAQAQDDA AAERAARRRS TVREKVNFGS TEPKPEVSMP PAAEPAPQPE PAAPAPAPQA
ADESTPEAPR RAGWWSRRFG GGS
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