| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2430 |
|---|
| Symbol | |
|---|
| ID | 4022921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2707916 |
|---|
| End bp | 2709448 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637962623 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_569561 |
|---|
| Protein GI | 91976902 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.475252 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0146677 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCCGG AATCGACGCG CCGACGCGCA TTCATCCAGA TCACTCTGCT CTCACTCTCT
TTCGTCGTCC TGGTCGTGAT CAGCTTGGCG TCGGTGTTCT TGTTGCAGAA GGCGCGCGAC
GACAGCGCCT GGGTTGCGCA TACGCTGGAA GTCGAGAACC AGATTTCGCT CTCACAACTG
CAAATGCGCC GCTCGGAAAG CGCCGAGCGA GGCTTTCTGT TGACCGGTCA GCCGGAATTC
GTGTCGGAAT TCCAGAACTC CTCGGCGCAG GTGCCTCTGA TGCTGGGGCG GTTGCAGCAA
CTCGTCGCCG ACAACCCGGT GCAGCGCCCG CTGGTCGATA AGGCGATCGT GATCGCCGAT
GCCCGAATTG CAAGATTCAG AGAGCTGATC GCGTTGGCGC AGTCCAACCG CGCCGAAGAA
GCCCGGCGGA TCGTCCGCGA TGAGACCGAC CGCGAGTCGA TGAACCAGTT CGCCAGCCAT
ATGGCGGCGA TGCGAGCTGA GGAAAACAAA CTGTTCGCAA TGCGCACGGC TGCCGCCGAT
CGTAGCCAGT CGCTGGCGTC AATCGTCACG ACGACCGGCA CGGGCCTGGT GTTGGTGCTT
GCCGGCTTGT CGATCTTCCT GGTGCGACGT TCGGCGCGCG CCCGCGATGA AGCCGAAGCG
CTGCTGCGCG ACAACAACGT CAATCTCGAA ACCACGGTTT CGGAACGGAC GGCGGATCTG
CGCGAGGCCA ACGAGGAAAT CCAGCGTTTC GCCTATATCG TCAGTCACGA CCTGCGCTCG
CCGCTGGTCA ACATCATGGG TTTCACCAGC GAGCTCGAGG AATTGCGCGG CGACATCTTC
CGTCGCATTG CAACGCTCAG CCGCGAGGTC GCCGACAAAC AGATGCCGGA GAAGGCCGAC
AGCGACGGCG AACCGGAGCT GGAGGCTCCC GACAAGCAAC TCTCGGAGGA CTTCACCGAA
GCGCTCGGCT TCATCAAGTC ATCGATCGGA AAGATGGACC GGCTGATCAG CGCGATCCTC
AACCTCACCC GTGAGGGACG CCGCCAATTC CAGCCGGTGC CGATCGACAC GAGGGAATTG
ATCGAGAACA TCGTTTCCAC CGTGGCGCAT CAGGCTGCCG AGGCCAACGC CGAAATCCGG
ATCGAGCCGC TGCCGGAGAT CGTCAGCGAC CGCCTTGCAC TCGAACAGAT CTTTTCCAAC
CTGATCGACA ATGCTCTGAA ATATCTCCGG AGCGGAGTTC CGGGCGACAT CCGCATCCGT
GCCCGGCAGA AACTTGGCTT CGTGATCTTC GAGATCGCCG ACAATGGCCG GGGGATCGAC
CCGAAGGACC ATCAGAGAAT CTTTGATCTT TTCCGCCGGG CCGGTACACA GGACAGGCCC
GGTCAAGGCA TCGGGCTCGC CCATGTCCGT GCGCTCGTCA GGCGGCTGGG CGGAACCATG
TCGGTGTCCT CGGCGCTCGG CGAGGGGTCG ACCTTCACTA TCACGTTGCC AGCGAAATGG
ACCGCAGCGA CAAATCGGGA ACCGCGCTCA TGA
|
|---|
| Protein sequence | MTPESTRRRA FIQITLLSLS FVVLVVISLA SVFLLQKARD DSAWVAHTLE VENQISLSQL
QMRRSESAER GFLLTGQPEF VSEFQNSSAQ VPLMLGRLQQ LVADNPVQRP LVDKAIVIAD
ARIARFRELI ALAQSNRAEE ARRIVRDETD RESMNQFASH MAAMRAEENK LFAMRTAAAD
RSQSLASIVT TTGTGLVLVL AGLSIFLVRR SARARDEAEA LLRDNNVNLE TTVSERTADL
REANEEIQRF AYIVSHDLRS PLVNIMGFTS ELEELRGDIF RRIATLSREV ADKQMPEKAD
SDGEPELEAP DKQLSEDFTE ALGFIKSSIG KMDRLISAIL NLTREGRRQF QPVPIDTREL
IENIVSTVAH QAAEANAEIR IEPLPEIVSD RLALEQIFSN LIDNALKYLR SGVPGDIRIR
ARQKLGFVIF EIADNGRGID PKDHQRIFDL FRRAGTQDRP GQGIGLAHVR ALVRRLGGTM
SVSSALGEGS TFTITLPAKW TAATNREPRS
|
|---|
| |