| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2415 |
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| Symbol | |
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| ID | 4022906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2692364 |
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| End bp | 2694604 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637962608 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_569546 |
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| Protein GI | 91976887 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00456435 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0304891 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGTGACA TCCGACCCAT TAACCCCGTG ACCGCCTTCG CATCGGTGCT GCGCGCCTCG
ACGGCGACGC TGGCGCTGAG CATCGGACTC AGCGGGTTCG CAATCGAGGC CATGGCGGCG
CCGAAGAACG TTCCACTGCC GAAACCGCGA CCGATCTCGC GCAGCATCGT GCCGAAGACG
ACACCGGCCG TGACCGCGTC GATTCCCAAA CCATCCGCCC AACTCGCCAC CGCGGCGCCG
ACCGCGCCCG TCATCGAACC CACGCGTCCG CATTCGGCGC CGGCGATGGT CACGCGCAAG
CAGGCCACGC GCTCGGCTGT CGCAACCACG ACGCAGACAT CGCAGGCCGA CGCCGAGGCG
CTGGAGGGCG TCATCGAGCA GGTTCGCAAG CGCAAGGCAG CCGACGCGAT CCAGATCGCG
GATACGATTT CAGATCCGCT GGCGCGAAAG CTCGCCGAAT GGATCATTTT GCGTGGTGAG
AACAACGGCG TCAGCGTCGA ACGCTACCGC GCTTTCGTCC GCGCCAATCC GAGTTGGCCG
TCGCAGACCT TTCTCCGACG CAGGGCCGAA GCGGCGCTGT GGGACGACAA TCGCGACGAT
TCCGCCGTCC TCGCTTATTT CAACAGTGAG ACGCCGCTGT CGGCGAAGGG CAAGCTGGCG
CTGGCGCGCG CGACCTTGGC GCGTGGCGAC CGACGAACCG CAGAGCAGCT CGTCCGCGAC
GCCTGGCGCA GCGATACGAT GTCGGCGGCG ACCGAGACGA CCGCGATCGA GATGTTCGGC
GCGCTGATCG CCCCCGGTGA TCACAAGGCG CGGATGGACG CGTTTCTTTA CGGCAACGAC
AACGAGCCCG GGCTTCGCGC CGCAAGGCGG CTCGGCGCTG CGCAGCTTGC GCTGGCGAAA
GCCCGGCTCG CGGTGGACAA CAAATCCGCG CAGGGCAAAT CGCTGCTCGA TGACGTGCCG
GACGAGCTGC AAAGCGACCC CGGCTACATG TTCAGCAAGA TCCAGTTGCT GCGCCGTGAA
GAGAAGATCG CCGAGGCCGG GCGGCTGATG CTGACGGTGC CGCGCGATCC GAACCGGCTC
TACAATCTCG ACGAATGGTG GATCGAGCGG CGGCTGCTCG CGCGCAAGCT GATCGATATC
GGCGACTATC GCCTCGCCTA TCTGGTCGCA CGCAACGCTG CGACGCCGAC CCGCGAGGTC
TACAAGACCG AGCAGGAATT CACCGCCGGC TGGATCGCGC TTCGCTTCTT GAAGGACCCG
GCGACCGCCG CGCAACACTT CGCGCGGATT GGCAACGACA CCACCAACCC GACGGCGCGT
GCGCGCGGCG GTTACTGGCA GGGCCGCGCC GCAGAAGCGG TCGGCCGCAC GCAGGACGCC
CGCGCCGCCT ATTCGGCCGC CGCCGCGCAA TCGACCAGCT ATTATGGTCA GTTGGCGCGC
GCCAAACTCG GCCTGCCGCA GCTCGATCTG AACGGTGCGC CATCGAGCCA GGGCCGCGGC
GTCGAGCGGC TCGAAGTCGT GCGCGCGGTG CAGTTGCTTT ACGCCATCGG AGAGGGCGAA
GTCGCGATCC CGATCTTCGC CGATGTCGGC GAAAACGGCG ATGTCGACGC CCTGCTCGGC
CTGTCCGAAC TCGCCGCCCG CAACAATGAT GCACGTGCCA TGCTGCTGGT CGGCAAGGCG
GCGCTCAATC GCGGCCTGCC GTTCGATCAC TACGCGTATC CCATCGTGGG CATTCCGCAG
TTCAAGCAGA TCGGCCCGGA GGTCGAGCGC AGCATCGTTT ATGCGATCGC CCGGCAGGAG
AGCGGATTCA ATCCCGCGGT GGTGTCGCCG GCGCAGGCTT ACGGATTGAT GCAGGTGACG
CCCGATGCAG CGAAGTATGT CTGTCGCCGG CACGGCTGCA CTTACGACGT CCAGCGGCTG
AAAAACGATT CGGTCTACAA CGCAACGCTC GGCGCCGCCG AACTCGGCGG GCTGATCGAG
GACTACCGCG GCTCCTACAT TATGACCTTC GCGGGTTACA ACGCCGGCCG CGGCAGCGTG
CGCAAATGGG TCGAGCGCTA TGGCGACCCG CGCGATCCGA AGGTCGATGC GGTGGATTGG
GTCGAACTCA TCCCGTTCTC CGAGACCCGA AATTACGTGC AGCGGATCAT CGAGAATCTG
CAGGTCTATC GCGCGCGATT CGGCGGCGGC ACCCGGCTGC AGATCGACGC CGACCTGCGC
CGCGGCGCGG CGACCGAGTA G
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| Protein sequence | MRDIRPINPV TAFASVLRAS TATLALSIGL SGFAIEAMAA PKNVPLPKPR PISRSIVPKT
TPAVTASIPK PSAQLATAAP TAPVIEPTRP HSAPAMVTRK QATRSAVATT TQTSQADAEA
LEGVIEQVRK RKAADAIQIA DTISDPLARK LAEWIILRGE NNGVSVERYR AFVRANPSWP
SQTFLRRRAE AALWDDNRDD SAVLAYFNSE TPLSAKGKLA LARATLARGD RRTAEQLVRD
AWRSDTMSAA TETTAIEMFG ALIAPGDHKA RMDAFLYGND NEPGLRAARR LGAAQLALAK
ARLAVDNKSA QGKSLLDDVP DELQSDPGYM FSKIQLLRRE EKIAEAGRLM LTVPRDPNRL
YNLDEWWIER RLLARKLIDI GDYRLAYLVA RNAATPTREV YKTEQEFTAG WIALRFLKDP
ATAAQHFARI GNDTTNPTAR ARGGYWQGRA AEAVGRTQDA RAAYSAAAAQ STSYYGQLAR
AKLGLPQLDL NGAPSSQGRG VERLEVVRAV QLLYAIGEGE VAIPIFADVG ENGDVDALLG
LSELAARNND ARAMLLVGKA ALNRGLPFDH YAYPIVGIPQ FKQIGPEVER SIVYAIARQE
SGFNPAVVSP AQAYGLMQVT PDAAKYVCRR HGCTYDVQRL KNDSVYNATL GAAELGGLIE
DYRGSYIMTF AGYNAGRGSV RKWVERYGDP RDPKVDAVDW VELIPFSETR NYVQRIIENL
QVYRARFGGG TRLQIDADLR RGAATE
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