| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2310 |
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| Symbol | |
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| ID | 4022797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2578292 |
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| End bp | 2581480 |
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| Gene Length | 3189 bp |
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| Protein Length | 1062 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637962503 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_569443 |
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| Protein GI | 91976784 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.107479 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGC CACGCTTCTT TATCAATCGC CCGATCTTTG CGATCGTTCT TTCCGCCCTC
ATGCTGATCG CCGGTGCGAT AGCGCTATTC CGACTCTCGT TGAGCGAATA CCCGTCCATC
ACCCCGCCGA CCGTGCAGGT GACCGCTAGC TATCCGGGCG CGAACCCGCA GGTGATCGCC
GAGACAGTGG CCTCCCCGCT CGAGCAATCG GTCAACGGCG TCGAGGGCAT GCTCTATATG
AGCTCGCAGG CTGCGACCGA CGGCAGGATG ACGCTCACCG TCACGTTCGC TCAAGGCACC
GATGCGGACA TCGCCCAAAT TCAAGTGCAG AACCGCGTGT CGCGCGCCCT GCCGCGGCTG
CCCGAAGAGG TTCAACGCAT TGGCGTCGTC ACCCAAAAGA CCTCGCCCGA CATCCTGATG
GTGGTGCACC TTGTATCGCC CGGCAAGCGG TACGATCCGC TCTACATCTC CAACTACGCG
ACCCTCCAGA TTCGCGACAC GCTCGCCCGA CTGCCAGGGA TCGGCGATGT CGTCGTATGG
GGCGCCGGCG AGTACGCCAT GCGCGTATGG CTGGACCCCG CCAAGGTCGC TGCACGCGGT
CTGACGGCTG GCGATGTCGT CACCGCAATT CGCGAACAAA ACGTCCAGGT CGCAGCCGGT
TCGGTCGGCC AACAGCCTTC GGAGGCTGCC AGCTATCAGG TTACGGTCAG TACACAGGGG
CGACTGTCCA GCGAAGAACA ATTCGGCGAG ATCGTGATCA AGACCGGCGA TGACGGGCAG
ATCGTACGTC TGCGCGATGT TGCGCGGGTT GGCCTCGGTG CTGATGCCTA CGCGTTACGA
AGCCTGCTCA ACGGTGATCC GGCCGTTGCC ATGCAGATCA TTCAACGACC AGGTGCAAAT
GCACTGGACG TCTCGAACGC GGTACACGCC GAGATGGAGC GGTTGCGGCA AGATTTTCCG
GAAGGCCTGG AGTACCGGAT CGCTTACGAT CCGACCGTCT TCGTGCGCGC GTCTCTGGCC
GCCGTCATGA TGACGTTGCT CGAAGCGATC GTTCTCGTCG TCGTCGTCGT CGTCCTGTTC
CTGCAGACGT GGCGCGCTTC CATCATTCCG TTGGTGGCCG TGCCCGTATC GCTCGTCGGC
ACGCTTGCGG TGATGTATCT TTTGGGTTTT TCGCTGAACA CTTTATCGCT GTTCGGCCTG
GTTCTTTCGA TCGGAATCGT CGTCGATGAC GCCATCGTTG TCGTCGAGAA TGTCGAACGG
CATATCGGTC TTGGCGAAAC GCCGAAGGAA GCGGCCCGCA AGGCGATGGA TGAGGTGACT
GCGCCGATCA TCGCGATCAC TTCCGTTCTG GCTGCAGTGT TCATTCCGTC TGCATTTCTG
TCGGGCCTTA TGGGCGAGTT CTACCGCCAG TTCGCAGTCA CGATTGCGAT CTCGACGGTT
CTTTCGGCGA TCAACTCCCT GACGCTTTCG CCGGCGCTGG CAGGCATGCT CTTGAAATCA
CACCACGCAG AATCAAACCG CGACTGGCTT ACCCGCGGCA TCGATTTCGC GCTCGGCTGG
TTTTTCCGTC TGTTCAATCG CTTCTTCGAC AGGGCATCGA GCGCCTATGT CGGCGCGGCA
CGCGGCGCCA TCCGCATCAG CGGCGTAATC CTGATACTCT ATGCAGCACT TGTTGGAATG
ACGTGGGTAG GATTCCAGAG CATCCCGACC GGTTTCGTGC CTGCTCAGGA CAAATACTAT
CTCGTCGGCA TTGCCCAACT GCCGTCCGGG GCGTCGCTCG ATCGGACGGA GGCTGTCGTC
AAAGAGATGT CCAGGATCGC GGCCGCGGAA CCGGGCGTCG AAAGCATCGT GGCCTTTCCG
GGCCTGTCCG TGAACGGCTT CGTCAACCTG CCAAATGCAG CCGTCGTCTT CGCGATGCTC
GATCCATTCG AGCAGCGCAA GGATCCGTCT CTCTCGGCCA ATGCGATCGC TGGCCGGCTG
ATGGGCAAGT ACAGCCAGAT CCCTGACGGC TTCGTCGGCA TTTTCCCGCC GCCGCCGGTT
CCGGGGCTCG GAACGATCGG TGGCTTCAAG CTCCAGATCG AGGATCGCGC CGGCGCAGGC
CTCGAGGCCC TTGCCAAGGC GCAGGGCGAG ATCATGGCGA AAGCTTCGAA CGCGCCGGAG
CTTGCCGGCA TGATGGCGAG CTTCCAGATG AACGCGCCAC AGGTTCAGGT CGAACTCGAT
CGGGTCAAGG CCAAGGCGCA AGGCGTTCCG CTGACGGCGA TCTTCGAGAC ATTGCAGGTT
AATCTGGGTT CCTTCTACGC AAACGATTTC AACCGTTTCG GTCGCACCTA TCGCGTGATC
GCCCAGGCGG AGGAGCGATT CCGCGCACAA ATAGACGATA TTGCGCGCCT CAAGGTTCGA
AATGCCGCGG GCGAGATGGT CCCCTTGGCG GCTCTTGCAA CTGTTGTTAC CAGTTCAGGA
CCAGATCGGG TGATGCACTA CAATGGCTAT CCCTCGGTCG ACATCACAGG AGGTCCGGCA
CCGGGTTATT CGTCCGGGCA AGCGACAGCG GCAATTGAGC GGATCGTCGT TGAGACGTTG
CCAGACGGTA TGATGTTCGA GTGGACTGAT CTGACCTTCC AGGAGAAACA GGCTGGGAAC
ACGGCCATGA TCGTTTTTCC GCTCGCAGTC TTGCTCGCGT TCTTGATTCT CGCAGCGCAA
TACAACAGCT GGTCATTGCC CTTCACCGTC CTCCTCATCG CGCCGTTGGC GTTGCTGTCT
GCCATCATCG GCGTCTGGCT CTCCAACGGA GATAACAACA TCTTCACCCA GATCGCCTTT
GTCGTGTTGG TCGGTCTCGC GGCCAAGAAT GCGATCCTGA TTGTGGAGTT CGCCTACAAA
GAGGAGAAGG ATGGCCGCGA GCCACTTGCT GCGGTGCTCG AATCCGCGCG ACTGCGTCTG
AGGCCAATTC TGATGACATC GCTCGCATTC ATCGCTGGTG TTGTGCCACT GGTCATGGCA
ACGGGCGCCG GTGCAGAGAT GCGCCATGCG ATGGGCATCG CCGTGTTCGC CGGCATGCTT
GGCGTGACCT TCTTCGGGTT GATCCTGACG CCCGTCTTTT ATGTCGTCAT CCGACGGCTG
GTCCTGCGGC GAGAAACCAA TTCCGGGGCT ACCCGATTGA CGCCAGTCGA AGGGGAGCCT
CTGGGCTAA
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| Protein sequence | MSLPRFFINR PIFAIVLSAL MLIAGAIALF RLSLSEYPSI TPPTVQVTAS YPGANPQVIA
ETVASPLEQS VNGVEGMLYM SSQAATDGRM TLTVTFAQGT DADIAQIQVQ NRVSRALPRL
PEEVQRIGVV TQKTSPDILM VVHLVSPGKR YDPLYISNYA TLQIRDTLAR LPGIGDVVVW
GAGEYAMRVW LDPAKVAARG LTAGDVVTAI REQNVQVAAG SVGQQPSEAA SYQVTVSTQG
RLSSEEQFGE IVIKTGDDGQ IVRLRDVARV GLGADAYALR SLLNGDPAVA MQIIQRPGAN
ALDVSNAVHA EMERLRQDFP EGLEYRIAYD PTVFVRASLA AVMMTLLEAI VLVVVVVVLF
LQTWRASIIP LVAVPVSLVG TLAVMYLLGF SLNTLSLFGL VLSIGIVVDD AIVVVENVER
HIGLGETPKE AARKAMDEVT APIIAITSVL AAVFIPSAFL SGLMGEFYRQ FAVTIAISTV
LSAINSLTLS PALAGMLLKS HHAESNRDWL TRGIDFALGW FFRLFNRFFD RASSAYVGAA
RGAIRISGVI LILYAALVGM TWVGFQSIPT GFVPAQDKYY LVGIAQLPSG ASLDRTEAVV
KEMSRIAAAE PGVESIVAFP GLSVNGFVNL PNAAVVFAML DPFEQRKDPS LSANAIAGRL
MGKYSQIPDG FVGIFPPPPV PGLGTIGGFK LQIEDRAGAG LEALAKAQGE IMAKASNAPE
LAGMMASFQM NAPQVQVELD RVKAKAQGVP LTAIFETLQV NLGSFYANDF NRFGRTYRVI
AQAEERFRAQ IDDIARLKVR NAAGEMVPLA ALATVVTSSG PDRVMHYNGY PSVDITGGPA
PGYSSGQATA AIERIVVETL PDGMMFEWTD LTFQEKQAGN TAMIVFPLAV LLAFLILAAQ
YNSWSLPFTV LLIAPLALLS AIIGVWLSNG DNNIFTQIAF VVLVGLAAKN AILIVEFAYK
EEKDGREPLA AVLESARLRL RPILMTSLAF IAGVVPLVMA TGAGAEMRHA MGIAVFAGML
GVTFFGLILT PVFYVVIRRL VLRRETNSGA TRLTPVEGEP LG
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