Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2310 |
Symbol | |
ID | 4022797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 2578292 |
End bp | 2581480 |
Gene Length | 3189 bp |
Protein Length | 1062 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637962503 |
Product | hydrophobe/amphiphile efflux-1 HAE1 |
Protein accession | YP_569443 |
Protein GI | 91976784 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.107479 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCTGC CACGCTTCTT TATCAATCGC CCGATCTTTG CGATCGTTCT TTCCGCCCTC ATGCTGATCG CCGGTGCGAT AGCGCTATTC CGACTCTCGT TGAGCGAATA CCCGTCCATC ACCCCGCCGA CCGTGCAGGT GACCGCTAGC TATCCGGGCG CGAACCCGCA GGTGATCGCC GAGACAGTGG CCTCCCCGCT CGAGCAATCG GTCAACGGCG TCGAGGGCAT GCTCTATATG AGCTCGCAGG CTGCGACCGA CGGCAGGATG ACGCTCACCG TCACGTTCGC TCAAGGCACC GATGCGGACA TCGCCCAAAT TCAAGTGCAG AACCGCGTGT CGCGCGCCCT GCCGCGGCTG CCCGAAGAGG TTCAACGCAT TGGCGTCGTC ACCCAAAAGA CCTCGCCCGA CATCCTGATG GTGGTGCACC TTGTATCGCC CGGCAAGCGG TACGATCCGC TCTACATCTC CAACTACGCG ACCCTCCAGA TTCGCGACAC GCTCGCCCGA CTGCCAGGGA TCGGCGATGT CGTCGTATGG GGCGCCGGCG AGTACGCCAT GCGCGTATGG CTGGACCCCG CCAAGGTCGC TGCACGCGGT CTGACGGCTG GCGATGTCGT CACCGCAATT CGCGAACAAA ACGTCCAGGT CGCAGCCGGT TCGGTCGGCC AACAGCCTTC GGAGGCTGCC AGCTATCAGG TTACGGTCAG TACACAGGGG CGACTGTCCA GCGAAGAACA ATTCGGCGAG ATCGTGATCA AGACCGGCGA TGACGGGCAG ATCGTACGTC TGCGCGATGT TGCGCGGGTT GGCCTCGGTG CTGATGCCTA CGCGTTACGA AGCCTGCTCA ACGGTGATCC GGCCGTTGCC ATGCAGATCA TTCAACGACC AGGTGCAAAT GCACTGGACG TCTCGAACGC GGTACACGCC GAGATGGAGC GGTTGCGGCA AGATTTTCCG GAAGGCCTGG AGTACCGGAT CGCTTACGAT CCGACCGTCT TCGTGCGCGC GTCTCTGGCC GCCGTCATGA TGACGTTGCT CGAAGCGATC GTTCTCGTCG TCGTCGTCGT CGTCCTGTTC CTGCAGACGT GGCGCGCTTC CATCATTCCG TTGGTGGCCG TGCCCGTATC GCTCGTCGGC ACGCTTGCGG TGATGTATCT TTTGGGTTTT TCGCTGAACA CTTTATCGCT GTTCGGCCTG GTTCTTTCGA TCGGAATCGT CGTCGATGAC GCCATCGTTG TCGTCGAGAA TGTCGAACGG CATATCGGTC TTGGCGAAAC GCCGAAGGAA GCGGCCCGCA AGGCGATGGA TGAGGTGACT GCGCCGATCA TCGCGATCAC TTCCGTTCTG GCTGCAGTGT TCATTCCGTC TGCATTTCTG TCGGGCCTTA TGGGCGAGTT CTACCGCCAG TTCGCAGTCA CGATTGCGAT CTCGACGGTT CTTTCGGCGA TCAACTCCCT GACGCTTTCG CCGGCGCTGG CAGGCATGCT CTTGAAATCA CACCACGCAG AATCAAACCG CGACTGGCTT ACCCGCGGCA TCGATTTCGC GCTCGGCTGG TTTTTCCGTC TGTTCAATCG CTTCTTCGAC AGGGCATCGA GCGCCTATGT CGGCGCGGCA CGCGGCGCCA TCCGCATCAG CGGCGTAATC CTGATACTCT ATGCAGCACT TGTTGGAATG ACGTGGGTAG GATTCCAGAG CATCCCGACC GGTTTCGTGC CTGCTCAGGA CAAATACTAT CTCGTCGGCA TTGCCCAACT GCCGTCCGGG GCGTCGCTCG ATCGGACGGA GGCTGTCGTC AAAGAGATGT CCAGGATCGC GGCCGCGGAA CCGGGCGTCG AAAGCATCGT GGCCTTTCCG GGCCTGTCCG TGAACGGCTT CGTCAACCTG CCAAATGCAG CCGTCGTCTT CGCGATGCTC GATCCATTCG AGCAGCGCAA GGATCCGTCT CTCTCGGCCA ATGCGATCGC TGGCCGGCTG ATGGGCAAGT ACAGCCAGAT CCCTGACGGC TTCGTCGGCA TTTTCCCGCC GCCGCCGGTT CCGGGGCTCG GAACGATCGG TGGCTTCAAG CTCCAGATCG AGGATCGCGC CGGCGCAGGC CTCGAGGCCC TTGCCAAGGC GCAGGGCGAG ATCATGGCGA AAGCTTCGAA CGCGCCGGAG CTTGCCGGCA TGATGGCGAG CTTCCAGATG AACGCGCCAC AGGTTCAGGT CGAACTCGAT CGGGTCAAGG CCAAGGCGCA AGGCGTTCCG CTGACGGCGA TCTTCGAGAC ATTGCAGGTT AATCTGGGTT CCTTCTACGC AAACGATTTC AACCGTTTCG GTCGCACCTA TCGCGTGATC GCCCAGGCGG AGGAGCGATT CCGCGCACAA ATAGACGATA TTGCGCGCCT CAAGGTTCGA AATGCCGCGG GCGAGATGGT CCCCTTGGCG GCTCTTGCAA CTGTTGTTAC CAGTTCAGGA CCAGATCGGG TGATGCACTA CAATGGCTAT CCCTCGGTCG ACATCACAGG AGGTCCGGCA CCGGGTTATT CGTCCGGGCA AGCGACAGCG GCAATTGAGC GGATCGTCGT TGAGACGTTG CCAGACGGTA TGATGTTCGA GTGGACTGAT CTGACCTTCC AGGAGAAACA GGCTGGGAAC ACGGCCATGA TCGTTTTTCC GCTCGCAGTC TTGCTCGCGT TCTTGATTCT CGCAGCGCAA TACAACAGCT GGTCATTGCC CTTCACCGTC CTCCTCATCG CGCCGTTGGC GTTGCTGTCT GCCATCATCG GCGTCTGGCT CTCCAACGGA GATAACAACA TCTTCACCCA GATCGCCTTT GTCGTGTTGG TCGGTCTCGC GGCCAAGAAT GCGATCCTGA TTGTGGAGTT CGCCTACAAA GAGGAGAAGG ATGGCCGCGA GCCACTTGCT GCGGTGCTCG AATCCGCGCG ACTGCGTCTG AGGCCAATTC TGATGACATC GCTCGCATTC ATCGCTGGTG TTGTGCCACT GGTCATGGCA ACGGGCGCCG GTGCAGAGAT GCGCCATGCG ATGGGCATCG CCGTGTTCGC CGGCATGCTT GGCGTGACCT TCTTCGGGTT GATCCTGACG CCCGTCTTTT ATGTCGTCAT CCGACGGCTG GTCCTGCGGC GAGAAACCAA TTCCGGGGCT ACCCGATTGA CGCCAGTCGA AGGGGAGCCT CTGGGCTAA
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Protein sequence | MSLPRFFINR PIFAIVLSAL MLIAGAIALF RLSLSEYPSI TPPTVQVTAS YPGANPQVIA ETVASPLEQS VNGVEGMLYM SSQAATDGRM TLTVTFAQGT DADIAQIQVQ NRVSRALPRL PEEVQRIGVV TQKTSPDILM VVHLVSPGKR YDPLYISNYA TLQIRDTLAR LPGIGDVVVW GAGEYAMRVW LDPAKVAARG LTAGDVVTAI REQNVQVAAG SVGQQPSEAA SYQVTVSTQG RLSSEEQFGE IVIKTGDDGQ IVRLRDVARV GLGADAYALR SLLNGDPAVA MQIIQRPGAN ALDVSNAVHA EMERLRQDFP EGLEYRIAYD PTVFVRASLA AVMMTLLEAI VLVVVVVVLF LQTWRASIIP LVAVPVSLVG TLAVMYLLGF SLNTLSLFGL VLSIGIVVDD AIVVVENVER HIGLGETPKE AARKAMDEVT APIIAITSVL AAVFIPSAFL SGLMGEFYRQ FAVTIAISTV LSAINSLTLS PALAGMLLKS HHAESNRDWL TRGIDFALGW FFRLFNRFFD RASSAYVGAA RGAIRISGVI LILYAALVGM TWVGFQSIPT GFVPAQDKYY LVGIAQLPSG ASLDRTEAVV KEMSRIAAAE PGVESIVAFP GLSVNGFVNL PNAAVVFAML DPFEQRKDPS LSANAIAGRL MGKYSQIPDG FVGIFPPPPV PGLGTIGGFK LQIEDRAGAG LEALAKAQGE IMAKASNAPE LAGMMASFQM NAPQVQVELD RVKAKAQGVP LTAIFETLQV NLGSFYANDF NRFGRTYRVI AQAEERFRAQ IDDIARLKVR NAAGEMVPLA ALATVVTSSG PDRVMHYNGY PSVDITGGPA PGYSSGQATA AIERIVVETL PDGMMFEWTD LTFQEKQAGN TAMIVFPLAV LLAFLILAAQ YNSWSLPFTV LLIAPLALLS AIIGVWLSNG DNNIFTQIAF VVLVGLAAKN AILIVEFAYK EEKDGREPLA AVLESARLRL RPILMTSLAF IAGVVPLVMA TGAGAEMRHA MGIAVFAGML GVTFFGLILT PVFYVVIRRL VLRRETNSGA TRLTPVEGEP LG
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