Gene RPD_2290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_2290 
Symbol 
ID4022775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2554273 
End bp2556282 
Gene Length2010 bp 
Protein Length669 aa 
Translation table11 
GC content60% 
IMG OID637962482 
ProductATP-dependent OLD family endonuclease 
Protein accessionYP_569423 
Protein GI91976764 
COG category[L] Replication, recombination and repair 
COG ID[COG3593] Predicted ATP-dependent endonuclease of the OLD family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.23738 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATCTCA AGAATATGAA GCTCAACAGC TTTCGATCTT TCGACCAAGG AGAGATCGAA 
CTCCAAAAAG ACTTGACGGT CTTCGTGGGT GAAAACAACG GAGGCAAAAG CAACGCGATC
GACGCAGTTC GCCTGCTTAC AACGCCTCTC GGTGGTCGAC GGGAAATTTA TTGCGAGTCC
ACAGACGTTC GCTTTCAGAG CACGACCACC TACTTCGAGT TGGAGGGGTG CTTCGCAGAG
CTTTCAACGG GGCAGCAAGG GCGCTTCATT TCGGCCGCCA CAGACGCCTC GTTGACCCAG
GCGCGTTTCG GCCTGCGTTT CGATGGCGCT CGATCGGGCA TCAAGCCGGT GCTCTGGGCC
GGCAAGGAAG GAAACTCGGC CGAACCAGGC TGCCATGAGA TGGTCCGGCA TGTTTACCTG
CCGCCGCTCC GTGACGCGAA GCGCTCTCTG GCGTCCGGCA ATCCTACGCG AATCATGGCG
CTCCTAAATC ACTTCCTCGA GGGGACGACG CCCGCACAGC TCGCGAAAGA ACTTGGGCGC
ACCCACTCGC ATGATGTCCT CGTCAAAGTA GACGGTGCAG TCGAGAAGGG TCTGTCAGCG
CTGACGTCGG GGGTTCGCCG ACAAACAGCT TCGCTCGGAT TCTCTACGGA CGAAGCCTTG
GTGGATATCG CCCGAGACCT GAGATTCAAG CTCGCCGACC ACGGCGTCGA CCCCGAAGAC
CTCCGGTATT CCGGACACGG ATACGCAAAT CTCCTGTTCA TGGCGATCAT CGCGGTAGAG
CTTGAGAAGG TCCGATCAGC CGACCTCACG CTGTTCCTCG TCGAGGAGCC TGAGGCGCAT
CTTCATCCGC AGCTTCAGGC GGCCGTCCTC GCCTTCTTGA GAGACCAGGC CGAGCAATCG
CGCAAAGACG CGCCCACTGA CCACGCTCCA TCTGGTGAAC TCCAGGTCAT CGTCGCGACG
CATTCCCCGA ACCTTTCGGC GTGGGTCAAC AGTGACCGAC TCGTCGTGTT CAAGTCCGTC
GTGGCGAGCG CCGAGCAGGC GCCTGCTGGC GAACCAACCA TCGAGCCGAC CGTCGCCGAC
GCGGCGGTCA TCGGAAGTGG GCTGGGCACC GACCACACCG AAGCTGACGT GACGGGCACC
GATGCGCTCA CCGCCACCAT GACGGCGGCG GCGCTTCGCA GGTCCACCCG CTGCATTCCC
TTGTCGTTGA TGCAGCTTGA TGCGCTGGAG CGCCGCAAGG TCGATCGCTA CCTCGATGTC
ACCAAGGCGG CGCTTCTCTT CGGCGGACGA GTCTTGCTGG TCGAAGGAAT CGCAGAAGCC
CTTCTCCTCC CGGCCATCGC AAAGCATCAC ACGCTGAAGG AACATCCCGA CCAACTCCGT
CTGTTCAGAT CAACGGTGTT CGTCCCCATC GATGGCGTCG ATTTCAGCCC GTACGCGACC
CTGCTGCTGA CGACGGTCAA TGGAGCGCGC ATCGCGGACC GTGTCGTCAT CCTGACGGAC
GGAGACAAAG GTACGGGCGA CAGCGACGAT GACGATGACG ATGAAGAGGA GCTGCCGAGC
GACACCGTGG AAAAGGTCCC AGCTAACCCC GCTCTGGAAC AAGACACACC CGTGGTATCC
GACGCGGATG ATGCGATCGA CGCGGAGGAG CCACCTATTC CAGGTGAGAT GCGCAAGGCT
GCACTAATGA GCCTGGCTAG CTCGCTGGGC GCGAGCGAGC ATCTTGCGGC GGTCACGAGC
ATCTATTCGC TAGAGACCGA GCTGCTGGAG GCGGGCAATA CCGCCATCCT TCGCAAGGCG
TACCTGACGC TTCACCCAAG ATCGAAAAAG AAATGGGACA ACGCCGTTGC GCTCAGCGGC
GATGAACGCG CCAAGAAAAT CCATGAGATA TTCAAAAAGA CCCGCAAGGG CGATTTCGCT
CAGATTCTCG CGCGTCTGAT CGAGGATGGC GACGCATTTG TAGTCCCCGA CTACATCGCG
AAGGCCATTG AGGAGGTCGT TGTCCCGTGA
 
Protein sequence
MYLKNMKLNS FRSFDQGEIE LQKDLTVFVG ENNGGKSNAI DAVRLLTTPL GGRREIYCES 
TDVRFQSTTT YFELEGCFAE LSTGQQGRFI SAATDASLTQ ARFGLRFDGA RSGIKPVLWA
GKEGNSAEPG CHEMVRHVYL PPLRDAKRSL ASGNPTRIMA LLNHFLEGTT PAQLAKELGR
THSHDVLVKV DGAVEKGLSA LTSGVRRQTA SLGFSTDEAL VDIARDLRFK LADHGVDPED
LRYSGHGYAN LLFMAIIAVE LEKVRSADLT LFLVEEPEAH LHPQLQAAVL AFLRDQAEQS
RKDAPTDHAP SGELQVIVAT HSPNLSAWVN SDRLVVFKSV VASAEQAPAG EPTIEPTVAD
AAVIGSGLGT DHTEADVTGT DALTATMTAA ALRRSTRCIP LSLMQLDALE RRKVDRYLDV
TKAALLFGGR VLLVEGIAEA LLLPAIAKHH TLKEHPDQLR LFRSTVFVPI DGVDFSPYAT
LLLTTVNGAR IADRVVILTD GDKGTGDSDD DDDDEEELPS DTVEKVPANP ALEQDTPVVS
DADDAIDAEE PPIPGEMRKA ALMSLASSLG ASEHLAAVTS IYSLETELLE AGNTAILRKA
YLTLHPRSKK KWDNAVALSG DERAKKIHEI FKKTRKGDFA QILARLIEDG DAFVVPDYIA
KAIEEVVVP