| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2276 |
|---|
| Symbol | |
|---|
| ID | 4022761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2539567 |
|---|
| End bp | 2542587 |
|---|
| Gene Length | 3021 bp |
|---|
| Protein Length | 1006 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637962468 |
|---|
| Product | conjugal transfer relaxase TraA |
|---|
| Protein accession | YP_569409 |
|---|
| Protein GI | 91976750 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.179337 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATCT ATCATCTTCA CGTCAAGGTC ATTGGCCGCA AATCCGGCTC CAGCGCGGTG
GCTTCCGCCG CCTACCGCTC GGCGTCGCGG CTGCGCGACG ACCGGCTGGA GCGCAGCCAC
GACTTTTCGG CGAAGCGCGG CGTCGTCCAT TCCGAGGTCA TGCTGCCGGA GAATGCGCCG
CAGGCGTGGA GCGACCGCGA ACGGTTGTGG AATGATGTCG AGGCGTTCGA GGTCCGCAAG
GACGCGCAGC TGGCCCGCGA GGTTGAATTC GCACTTCCAC GCGAGATGAC GCAGCGCCAG
GGCATCGAAC TTGCCCGCGA CTTCGTGCAG TCCGAATTCG TTGACCAAGG CATGATTGCC
GACGTCAATG TGCATTGGGA TATGGCCGAG GACGGCATGC CCAAACCCCA CGCCCATGTC
ATGCTGACCA TGCGTGCGGT GAACGAAAAC GGCTTCGGCC AAAAGGTGCG AGACTGGAAC
CGCATCGAGA TGGTCGAGCG GTGGCGGGAG CGCTGGGCCG AGATCGCCAA TCAGCGGCTG
GCCGAACTCG ACATCGACGC CCGGATCGAC CATCGAAGCT TCGAGGCGCA GGGCATCGGG
CTGGAGCCGC AAAGCCAGAT CGGCGCGACG GCGCAGCGGA TCGAAAGCCA AGGGATCGAA
GGGCAAGAGA TCGAGGCCGC CGCCAATGTC GCCGATCGGG CCGAGATGCA CCGCGAGATT
GCGCGCGGCA ACGGCGAGCG CATTGTTGCT GATCCTTCCA TCGCACTGGA CGCCATCACG
CAGCAGCAAT CGACCTTCAC GCAGCGCGAC ATGGCGAAGT TCGCGCACCG GCACAGCGAC
GGCATCGACC AGTTCAACGC CGTCACGGGC GCGATGCGCG GCGCGCCCGA TCTGGTCGAA
CTGGGCAAGG ACGGACGGGG TGAGGATCGC TTCACCACCC GCGGAATGAT CGAGACCGAA
CAGCGCCTGC ACCGCGCCGC CGAGCGGATG GCAGAGCGGG ATCGTCATGA GGTGCAGGAC
GCTGACAGGT TGGCGGCGAG GGCGCGGGCG GAAGCGCGCG GTCTGGTGCT TTCGGCGGAG
CAAGCCGACG CCTTGGCGCA GGTGACGACC GGTCGCGATC TCGGCGTCGT GGTCGGCCAT
GCCGGGACGG GAAAGAGCGC GATGCTGGGC GTGGCGCGGG AGGCCTGGGA AGCAGCGGGC
TTTGAGGTTC GGGGCGTGGC GTTGTCCGGC ATCGCCGCCG AGAATCTGGC AAGCGGATCG
GGCATCGCGT CGCGCACCAT CGCGAGCCTG GAACATGGTT GGGCGCAGGG TCGCGACCTG
CTCAACGCGC GCGATGTTCT GGTGATCGAT GAGGCGGGCA TGGTGGGCAC GCGCCAGTTG
GAGCGCGTGC TGTCGCATGC TGCCGAGGCC GGCGCCAAGG TGGTGCTGGT CGGCGATCCG
CAGCAGTTGC AAGCAATAGA AGCGGGCGCG GCGTTTCGGT CGATCTTTGA GCGCCACGGC
GGCGCGGAGA TCGGTGAGGT GCGCCGCCAA CGGCAGGACT GGCAGCGCGA CGCAACGCGC
GATCTCGCCA ATGGCAAGAT CGGCCATGTG CTTGATGCCT ATCGCTCCCA CGACATGGTC
CATGCCGCAC CGACACGGGA GGACGCGCGC AACAATCTGA TCGAGCGCTG GGACCGCGAC
CGGCATGCAT CGCCCGAGCG CAGCCGCATT ATCCTTACCC ACACCAATGA CGAGGTTCGT
GCGCTCAACG CCGCCGCGCG CGAGCGGATG CGGGCCGCCG GTGATCTCGG CAACGATCTG
TGTCTCACGG TCGAACGCGG CGAGCGCAGC TTCGCCAGCG GCGACCGCAT CATGTTTCTG
CAAAACGAGC GCGGCCTCGG TGGGGATGGA CTTGGCGTGA AGAACGGCAC GCTCGGGACC
ATCGCTGAGG TCGGCGCACG GTCCATGTCG GTGCACACCG ACGACGGGCG CAACGTCTCG
TTCGATCTCA AGGACTACAA CCGCATCGAC CATGGCTATG CCGCGACCAT CCACAAGGCG
CAGGGCATGA CGGTGGACTG CACCCACGTG TTGGCGACGC CGGGCCTGGA CGCCCACGCC
AGCTATGTCG CTCTTTCCCG GCACCGTGAC GGTATGGAGC TGCATTACGG CCACGACGAC
TTCACCAGCC AGGACCGGCT CGCCCGCACC CTTTCGCGCG ACCGGGCCAA GGACATGGCG
TCGGACTACG ATCGGTCTGA CCCGGTGCAA CACTATGCCG AGCGGCGCGG CATCACCTTC
CGCGCCCGTG TTGCCGAGAT CGTGCGCAAG ATCGTGCCCG AGAGGGTGCG CGGCGTGTTC
GATGGCCTGC GCCTTTCGAC GGTCCCGGCA CCGGAAGCCA GGCAGGAGCC GGAACGGGAA
AGCGCCGCGG CGGCGGTCCG GCGAACGACG GATGCGCCGG GAAGGACCGT GGCAGCGGAC
AGCGACGCGG CGCTGCGCCA AGCTCGCACC AAGGCGCTCA TCCGCCACGC CCGCGCCGTG
AATGCGATCT TCGAGATGCA GCAGCAGGGA GGCAAAGCCA GCCCGGAGCA GGTGAAGGAA
TTGCAGGAGG CCCGCAAAGC GTTCGAGGAA GTACGGCCCT ATGGCTCGTA CGACGCCGAA
GCCGCCTACA AGTCGAACCC GGAACTCGCT GAGCAAGCCG CTTCGGGCAA TCCCGCCCGC
GCGATCCGCG CCCTCCAACT CGAAACCGAG CTGCGCACCG ACCCAGCCCG ACGCGCCGAC
CGCTTCGTGG AACGTTGGCA CAAGCTCGAC CAAACCAGCC AGCGTCAGTA TCAGGCCGGC
GACATGTCCG GTTACAAGAC CACGCGGGCA AGCATGGGCG ACATGGCGAA AAGCCTGGAG
CGCGATCCGC AGCTTGAATC GATCCTCACC AACCGCAAGG CCGAACTCGG CATCCAGATG
GAAAGTGGAC GCCGGCTCGG TGCGGCCCTT GCCTTTGCGC ATGGTATCGA CATCGGCAGA
GGCCGGGGCA TCGGAATCTG A
|
|---|
| Protein sequence | MAIYHLHVKV IGRKSGSSAV ASAAYRSASR LRDDRLERSH DFSAKRGVVH SEVMLPENAP
QAWSDRERLW NDVEAFEVRK DAQLAREVEF ALPREMTQRQ GIELARDFVQ SEFVDQGMIA
DVNVHWDMAE DGMPKPHAHV MLTMRAVNEN GFGQKVRDWN RIEMVERWRE RWAEIANQRL
AELDIDARID HRSFEAQGIG LEPQSQIGAT AQRIESQGIE GQEIEAAANV ADRAEMHREI
ARGNGERIVA DPSIALDAIT QQQSTFTQRD MAKFAHRHSD GIDQFNAVTG AMRGAPDLVE
LGKDGRGEDR FTTRGMIETE QRLHRAAERM AERDRHEVQD ADRLAARARA EARGLVLSAE
QADALAQVTT GRDLGVVVGH AGTGKSAMLG VAREAWEAAG FEVRGVALSG IAAENLASGS
GIASRTIASL EHGWAQGRDL LNARDVLVID EAGMVGTRQL ERVLSHAAEA GAKVVLVGDP
QQLQAIEAGA AFRSIFERHG GAEIGEVRRQ RQDWQRDATR DLANGKIGHV LDAYRSHDMV
HAAPTREDAR NNLIERWDRD RHASPERSRI ILTHTNDEVR ALNAAARERM RAAGDLGNDL
CLTVERGERS FASGDRIMFL QNERGLGGDG LGVKNGTLGT IAEVGARSMS VHTDDGRNVS
FDLKDYNRID HGYAATIHKA QGMTVDCTHV LATPGLDAHA SYVALSRHRD GMELHYGHDD
FTSQDRLART LSRDRAKDMA SDYDRSDPVQ HYAERRGITF RARVAEIVRK IVPERVRGVF
DGLRLSTVPA PEARQEPERE SAAAAVRRTT DAPGRTVAAD SDAALRQART KALIRHARAV
NAIFEMQQQG GKASPEQVKE LQEARKAFEE VRPYGSYDAE AAYKSNPELA EQAASGNPAR
AIRALQLETE LRTDPARRAD RFVERWHKLD QTSQRQYQAG DMSGYKTTRA SMGDMAKSLE
RDPQLESILT NRKAELGIQM ESGRRLGAAL AFAHGIDIGR GRGIGI
|
|---|
| |